Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3226

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3225 and Shewana3_3226 are separated by 203 nucleotidesShewana3_3226 and Shewana3_3227 are separated by 511 nucleotides Shewana3_3225: Shewana3_3225 - peptidase S10, serine carboxypeptidase (RefSeq), at 3,866,794 to 3,868,344 _3225 Shewana3_3226: Shewana3_3226 - thiol:disulfide interchange protein, putative (RefSeq), at 3,868,548 to 3,869,093 _3226 Shewana3_3227: Shewana3_3227 - Fis family transcriptional regulator (RefSeq), at 3,869,605 to 3,871,071 _3227 Position (kb) 3868 3869 3870Strain fitness (log2 ratio) -2 -1 0 1at 3867.826 kb on - strand, within Shewana3_3225at 3867.841 kb on + strand, within Shewana3_3225at 3867.841 kb on + strand, within Shewana3_3225at 3868.009 kb on + strand, within Shewana3_3225at 3868.054 kb on + strand, within Shewana3_3225at 3868.211 kb on + strandat 3868.267 kb on - strandat 3868.366 kb on - strandat 3868.563 kb on - strandat 3868.640 kb on - strand, within Shewana3_3226at 3868.640 kb on - strand, within Shewana3_3226at 3868.717 kb on - strand, within Shewana3_3226at 3868.986 kb on - strand, within Shewana3_3226at 3869.005 kb on - strand, within Shewana3_3226at 3869.031 kb on - strand, within Shewana3_3226at 3869.043 kb on - strandat 3869.254 kb on - strandat 3869.349 kb on - strandat 3869.495 kb on - strandat 3869.523 kb on + strandat 3869.617 kb on - strandat 3869.668 kb on + strandat 3869.678 kb on - strandat 3869.690 kb on + strandat 3869.712 kb on + strandat 3869.943 kb on - strand, within Shewana3_3227at 3870.051 kb on + strand, within Shewana3_3227at 3870.059 kb on - strand, within Shewana3_3227

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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3,867,826 - Shewana3_3225 0.67 +0.2
3,867,841 + Shewana3_3225 0.68 +0.7
3,867,841 + Shewana3_3225 0.68 -0.7
3,868,009 + Shewana3_3225 0.78 +0.1
3,868,054 + Shewana3_3225 0.81 -0.9
3,868,211 + -1.5
3,868,267 - -1.7
3,868,366 - -1.5
3,868,563 - +0.2
3,868,640 - Shewana3_3226 0.17 +0.9
3,868,640 - Shewana3_3226 0.17 -1.2
3,868,717 - Shewana3_3226 0.31 +0.6
3,868,986 - Shewana3_3226 0.80 -0.5
3,869,005 - Shewana3_3226 0.84 +1.3
3,869,031 - Shewana3_3226 0.88 -1.7
3,869,043 - -2.0
3,869,254 - +0.3
3,869,349 - +0.2
3,869,495 - +0.6
3,869,523 + -0.3
3,869,617 - +0.4
3,869,668 + +0.2
3,869,678 - +0.5
3,869,690 + +0.3
3,869,712 + +0.4
3,869,943 - Shewana3_3227 0.23 -0.4
3,870,051 + Shewana3_3227 0.30 +0.1
3,870,059 - Shewana3_3227 0.31 -0.0

Or see this region's nucleotide sequence