Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3174 and Shewana3_3175 are separated by 97 nucleotides Shewana3_3175 and Shewana3_3176 are separated by 14 nucleotides Shewana3_3176 and Shewana3_3177 are separated by 146 nucleotides
Shewana3_3174: Shewana3_3174 - globin (RefSeq), at 3,815,059 to 3,816,252
_3174
Shewana3_3175: Shewana3_3175 - pseudouridine synthase, Rsu (RefSeq), at 3,816,350 to 3,817,075
_3175
Shewana3_3176: Shewana3_3176 - transcriptional regulator (RefSeq), at 3,817,090 to 3,817,710
_3176
Shewana3_3177: Shewana3_3177 - NADPH-dependent FMN reductase (RefSeq), at 3,817,857 to 3,818,471
_3177
Position (kb)
3816
3817
3818 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3815.518 kb on - strand, within Shewana3_3174 at 3815.518 kb on - strand, within Shewana3_3174 at 3815.648 kb on + strand, within Shewana3_3174 at 3815.712 kb on - strand, within Shewana3_3174 at 3815.738 kb on - strand, within Shewana3_3174 at 3815.791 kb on + strand, within Shewana3_3174 at 3815.932 kb on + strand, within Shewana3_3174 at 3815.972 kb on + strand, within Shewana3_3174 at 3815.980 kb on - strand, within Shewana3_3174 at 3816.023 kb on + strand, within Shewana3_3174 at 3816.028 kb on + strand, within Shewana3_3174 at 3816.158 kb on + strand at 3816.247 kb on + strand at 3816.247 kb on + strand at 3816.307 kb on + strand at 3816.418 kb on + strand at 3816.420 kb on - strand at 3816.426 kb on - strand, within Shewana3_3175 at 3816.790 kb on + strand, within Shewana3_3175 at 3816.801 kb on - strand, within Shewana3_3175 at 3816.819 kb on + strand, within Shewana3_3175 at 3816.834 kb on - strand, within Shewana3_3175 at 3816.861 kb on + strand, within Shewana3_3175 at 3816.869 kb on - strand, within Shewana3_3175 at 3817.011 kb on + strand at 3817.077 kb on + strand at 3817.161 kb on - strand, within Shewana3_3176 at 3817.434 kb on - strand, within Shewana3_3176 at 3817.523 kb on - strand, within Shewana3_3176 at 3817.624 kb on + strand, within Shewana3_3176 at 3817.718 kb on + strand at 3817.891 kb on - strand at 3817.978 kb on + strand, within Shewana3_3177
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 3,815,518 - Shewana3_3174 0.38 +1.1 3,815,518 - Shewana3_3174 0.38 +0.3 3,815,648 + Shewana3_3174 0.49 +0.3 3,815,712 - Shewana3_3174 0.55 +0.2 3,815,738 - Shewana3_3174 0.57 -0.5 3,815,791 + Shewana3_3174 0.61 +0.5 3,815,932 + Shewana3_3174 0.73 +0.2 3,815,972 + Shewana3_3174 0.76 -1.4 3,815,980 - Shewana3_3174 0.77 -0.5 3,816,023 + Shewana3_3174 0.81 +0.8 3,816,028 + Shewana3_3174 0.81 -1.4 3,816,158 + +0.4 3,816,247 + +1.2 3,816,247 + +0.4 3,816,307 + +1.2 3,816,418 + +1.3 3,816,420 - -0.6 3,816,426 - Shewana3_3175 0.10 -1.7 3,816,790 + Shewana3_3175 0.61 +0.6 3,816,801 - Shewana3_3175 0.62 +0.5 3,816,819 + Shewana3_3175 0.65 -0.0 3,816,834 - Shewana3_3175 0.67 +0.4 3,816,861 + Shewana3_3175 0.70 +0.3 3,816,869 - Shewana3_3175 0.71 +1.0 3,817,011 + +0.7 3,817,077 + -0.0 3,817,161 - Shewana3_3176 0.11 -0.7 3,817,434 - Shewana3_3176 0.55 -1.4 3,817,523 - Shewana3_3176 0.70 -3.5 3,817,624 + Shewana3_3176 0.86 +0.9 3,817,718 + -1.9 3,817,891 - +0.4 3,817,978 + Shewana3_3177 0.20 +0.3
Or see this region's nucleotide sequence