Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3112 and Shewana3_3113 are separated by 43 nucleotides Shewana3_3113 and Shewana3_3114 are separated by 58 nucleotides
Shewana3_3112: Shewana3_3112 - N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) , at 3,732,552 to 3,733,688
_3112
Shewana3_3113: Shewana3_3113 - Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) (from data) , at 3,733,732 to 3,734,730
_3113
Shewana3_3114: Shewana3_3114 - N-acetylglucosamine kinase (EC 2.7.1.59) (from data) , at 3,734,789 to 3,735,697
_3114
Position (kb)
3733
3734
3735 Strain fitness (log2 ratio)
-2
-1
0
1 at 3732.745 kb on - strand, within Shewana3_3112 at 3732.745 kb on - strand, within Shewana3_3112 at 3732.745 kb on - strand, within Shewana3_3112 at 3732.747 kb on + strand, within Shewana3_3112 at 3732.747 kb on + strand, within Shewana3_3112 at 3732.747 kb on + strand, within Shewana3_3112 at 3732.776 kb on - strand, within Shewana3_3112 at 3732.843 kb on - strand, within Shewana3_3112 at 3732.853 kb on - strand, within Shewana3_3112 at 3732.864 kb on + strand, within Shewana3_3112 at 3733.127 kb on + strand, within Shewana3_3112 at 3733.127 kb on + strand, within Shewana3_3112 at 3733.261 kb on - strand, within Shewana3_3112 at 3733.351 kb on - strand, within Shewana3_3112 at 3733.544 kb on + strand, within Shewana3_3112 at 3733.552 kb on - strand, within Shewana3_3112 at 3733.612 kb on + strand at 3733.706 kb on - strand at 3733.893 kb on - strand, within Shewana3_3113 at 3733.937 kb on + strand, within Shewana3_3113 at 3733.937 kb on + strand, within Shewana3_3113 at 3734.010 kb on + strand, within Shewana3_3113 at 3734.031 kb on - strand, within Shewana3_3113 at 3734.031 kb on - strand, within Shewana3_3113 at 3734.092 kb on + strand, within Shewana3_3113 at 3734.283 kb on - strand, within Shewana3_3113 at 3734.831 kb on + strand at 3735.107 kb on + strand, within Shewana3_3114 at 3735.223 kb on - strand, within Shewana3_3114 at 3735.244 kb on + strand, within Shewana3_3114 at 3735.275 kb on + strand, within Shewana3_3114 at 3735.455 kb on + strand, within Shewana3_3114 at 3735.455 kb on + strand, within Shewana3_3114 at 3735.457 kb on - strand, within Shewana3_3114 at 3735.463 kb on - strand, within Shewana3_3114
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 3,732,745 - Shewana3_3112 0.17 +0.7 3,732,745 - Shewana3_3112 0.17 -1.0 3,732,745 - Shewana3_3112 0.17 +0.2 3,732,747 + Shewana3_3112 0.17 -0.2 3,732,747 + Shewana3_3112 0.17 +0.1 3,732,747 + Shewana3_3112 0.17 -0.5 3,732,776 - Shewana3_3112 0.20 +0.3 3,732,843 - Shewana3_3112 0.26 -1.3 3,732,853 - Shewana3_3112 0.26 -2.3 3,732,864 + Shewana3_3112 0.27 +0.0 3,733,127 + Shewana3_3112 0.51 +1.0 3,733,127 + Shewana3_3112 0.51 +0.2 3,733,261 - Shewana3_3112 0.62 +0.3 3,733,351 - Shewana3_3112 0.70 +0.5 3,733,544 + Shewana3_3112 0.87 -0.4 3,733,552 - Shewana3_3112 0.88 -0.3 3,733,612 + -1.1 3,733,706 - +0.5 3,733,893 - Shewana3_3113 0.16 -1.1 3,733,937 + Shewana3_3113 0.21 -1.7 3,733,937 + Shewana3_3113 0.21 -1.1 3,734,010 + Shewana3_3113 0.28 +0.7 3,734,031 - Shewana3_3113 0.30 +0.8 3,734,031 - Shewana3_3113 0.30 -1.0 3,734,092 + Shewana3_3113 0.36 +0.2 3,734,283 - Shewana3_3113 0.55 +0.2 3,734,831 + +1.4 3,735,107 + Shewana3_3114 0.35 +0.1 3,735,223 - Shewana3_3114 0.48 -1.7 3,735,244 + Shewana3_3114 0.50 -0.7 3,735,275 + Shewana3_3114 0.53 +0.5 3,735,455 + Shewana3_3114 0.73 -0.8 3,735,455 + Shewana3_3114 0.73 +0.4 3,735,457 - Shewana3_3114 0.73 -1.4 3,735,463 - Shewana3_3114 0.74 +0.6
Or see this region's nucleotide sequence