Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3028

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3027 and Shewana3_3028 are separated by 179 nucleotidesShewana3_3028 and Shewana3_3029 are separated by 167 nucleotidesShewana3_3029 and Shewana3_3030 are separated by 11 nucleotides Shewana3_3027: Shewana3_3027 - signal peptidase I (RefSeq), at 3,632,110 to 3,633,027 _3027 Shewana3_3028: Shewana3_3028 - GTP-binding protein LepA (RefSeq), at 3,633,207 to 3,634,997 _3028 Shewana3_3029: Shewana3_3029 - positive regulator of sigma(E), RseC/MucC (RefSeq), at 3,635,165 to 3,635,638 _3029 Shewana3_3030: Shewana3_3030 - sigma E regulatory protein, MucB/RseB (RefSeq), at 3,635,650 to 3,636,582 _3030 Position (kb) 3633 3634 3635Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3633.342 kb on - strandat 3633.496 kb on - strand, within Shewana3_3028at 3634.001 kb on - strand, within Shewana3_3028at 3634.001 kb on - strand, within Shewana3_3028at 3634.056 kb on - strand, within Shewana3_3028at 3634.533 kb on - strand, within Shewana3_3028at 3634.638 kb on - strand, within Shewana3_3028at 3635.910 kb on - strand, within Shewana3_3030

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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3,633,342 - -2.8
3,633,496 - Shewana3_3028 0.16 -3.4
3,634,001 - Shewana3_3028 0.44 -3.8
3,634,001 - Shewana3_3028 0.44 -1.9
3,634,056 - Shewana3_3028 0.47 -2.5
3,634,533 - Shewana3_3028 0.74 -3.8
3,634,638 - Shewana3_3028 0.80 -1.4
3,635,910 - Shewana3_3030 0.28 +1.8

Or see this region's nucleotide sequence