Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2958

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2956 and Shewana3_2957 are separated by 7 nucleotidesShewana3_2957 and Shewana3_2958 are separated by 44 nucleotidesShewana3_2958 and Shewana3_2959 overlap by 1 nucleotides Shewana3_2956: Shewana3_2956 - hypothetical protein (RefSeq), at 3,549,897 to 3,550,760 _2956 Shewana3_2957: Shewana3_2957 - HNH endonuclease (RefSeq), at 3,550,768 to 3,551,529 _2957 Shewana3_2958: Shewana3_2958 - hypothetical protein (RefSeq), at 3,551,574 to 3,552,383 _2958 Shewana3_2959: Shewana3_2959 - hypothetical protein (RefSeq), at 3,552,383 to 3,553,984 _2959 Position (kb) 3551 3552 3553Strain fitness (log2 ratio) -2 -1 0 1at 3550.589 kb on + strand, within Shewana3_2956at 3550.590 kb on + strand, within Shewana3_2956at 3550.672 kb on + strand, within Shewana3_2956at 3550.713 kb on - strandat 3551.018 kb on + strand, within Shewana3_2957at 3551.389 kb on - strand, within Shewana3_2957at 3551.482 kb on - strandat 3551.519 kb on - strandat 3551.519 kb on - strandat 3551.940 kb on - strand, within Shewana3_2958at 3552.141 kb on - strand, within Shewana3_2958at 3552.307 kb on + strandat 3552.315 kb on - strandat 3552.353 kb on + strandat 3552.486 kb on - strandat 3552.666 kb on + strand, within Shewana3_2959at 3552.775 kb on + strand, within Shewana3_2959at 3552.780 kb on + strand, within Shewana3_2959at 3552.878 kb on - strand, within Shewana3_2959at 3553.074 kb on + strand, within Shewana3_2959at 3553.129 kb on - strand, within Shewana3_2959at 3553.311 kb on - strand, within Shewana3_2959at 3553.372 kb on - strand, within Shewana3_2959

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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3,550,589 + Shewana3_2956 0.80 -2.1
3,550,590 + Shewana3_2956 0.80 +0.9
3,550,672 + Shewana3_2956 0.90 +0.5
3,550,713 - -0.1
3,551,018 + Shewana3_2957 0.33 +0.1
3,551,389 - Shewana3_2957 0.81 +0.8
3,551,482 - -0.0
3,551,519 - +0.1
3,551,519 - +0.7
3,551,940 - Shewana3_2958 0.45 +0.4
3,552,141 - Shewana3_2958 0.70 -1.3
3,552,307 + -2.2
3,552,315 - +0.3
3,552,353 + -1.7
3,552,486 - +0.1
3,552,666 + Shewana3_2959 0.18 +0.3
3,552,775 + Shewana3_2959 0.24 +0.4
3,552,780 + Shewana3_2959 0.25 +0.6
3,552,878 - Shewana3_2959 0.31 -1.3
3,553,074 + Shewana3_2959 0.43 +0.3
3,553,129 - Shewana3_2959 0.47 +1.1
3,553,311 - Shewana3_2959 0.58 -1.0
3,553,372 - Shewana3_2959 0.62 -1.6

Or see this region's nucleotide sequence