Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2927

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2926 and Shewana3_2927 are separated by 37 nucleotidesShewana3_2927 and Shewana3_2928 are separated by 108 nucleotides Shewana3_2926: Shewana3_2926 - extracellular solute-binding protein (RefSeq), at 3,507,066 to 3,507,842 _2926 Shewana3_2927: Shewana3_2927 - cobalamin synthesis protein, P47K (RefSeq), at 3,507,880 to 3,508,992 _2927 Shewana3_2928: Shewana3_2928 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 3,509,101 to 3,510,564 _2928 Position (kb) 3507 3508 3509Strain fitness (log2 ratio) -2 -1 0 1at 3507.141 kb on - strandat 3507.189 kb on + strand, within Shewana3_2926at 3507.213 kb on + strand, within Shewana3_2926at 3507.301 kb on - strand, within Shewana3_2926at 3507.432 kb on - strand, within Shewana3_2926at 3507.569 kb on - strand, within Shewana3_2926at 3507.763 kb on + strand, within Shewana3_2926at 3507.763 kb on + strand, within Shewana3_2926at 3507.800 kb on + strandat 3508.096 kb on + strand, within Shewana3_2927at 3508.098 kb on + strand, within Shewana3_2927at 3508.347 kb on + strand, within Shewana3_2927at 3508.347 kb on + strand, within Shewana3_2927at 3508.347 kb on + strand, within Shewana3_2927at 3508.347 kb on + strand, within Shewana3_2927at 3508.355 kb on - strand, within Shewana3_2927at 3508.355 kb on - strand, within Shewana3_2927at 3508.427 kb on - strand, within Shewana3_2927at 3508.596 kb on + strand, within Shewana3_2927at 3508.680 kb on - strand, within Shewana3_2927at 3509.093 kb on - strandat 3509.093 kb on - strandat 3509.187 kb on - strandat 3509.222 kb on + strandat 3509.523 kb on + strand, within Shewana3_2928at 3509.533 kb on - strand, within Shewana3_2928at 3509.577 kb on - strand, within Shewana3_2928at 3509.850 kb on + strand, within Shewana3_2928

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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3,507,141 - +0.0
3,507,189 + Shewana3_2926 0.16 +1.1
3,507,213 + Shewana3_2926 0.19 -1.6
3,507,301 - Shewana3_2926 0.30 -1.1
3,507,432 - Shewana3_2926 0.47 +0.1
3,507,569 - Shewana3_2926 0.65 +0.3
3,507,763 + Shewana3_2926 0.90 +0.6
3,507,763 + Shewana3_2926 0.90 +0.7
3,507,800 + +0.2
3,508,096 + Shewana3_2927 0.19 +0.3
3,508,098 + Shewana3_2927 0.20 -2.0
3,508,347 + Shewana3_2927 0.42 -1.2
3,508,347 + Shewana3_2927 0.42 +0.7
3,508,347 + Shewana3_2927 0.42 -2.4
3,508,347 + Shewana3_2927 0.42 -1.5
3,508,355 - Shewana3_2927 0.43 -1.2
3,508,355 - Shewana3_2927 0.43 +0.3
3,508,427 - Shewana3_2927 0.49 +0.6
3,508,596 + Shewana3_2927 0.64 -2.0
3,508,680 - Shewana3_2927 0.72 +0.7
3,509,093 - -1.3
3,509,093 - +0.3
3,509,187 - +0.4
3,509,222 + +1.3
3,509,523 + Shewana3_2928 0.29 -0.1
3,509,533 - Shewana3_2928 0.30 +0.1
3,509,577 - Shewana3_2928 0.33 +0.7
3,509,850 + Shewana3_2928 0.51 -1.7

Or see this region's nucleotide sequence