Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2746 and Shewana3_2747 are separated by 230 nucleotides Shewana3_2747 and Shewana3_2748 are separated by 238 nucleotides
Shewana3_2746: Shewana3_2746 - hypothetical protein (RefSeq), at 3,277,084 to 3,277,914
_2746
Shewana3_2747: Shewana3_2747 - acetyl-CoA hydrolase/transferase (RefSeq), at 3,278,145 to 3,279,431
_2747
Shewana3_2748: Shewana3_2748 - ABC-2 type transporter (RefSeq), at 3,279,670 to 3,280,791
_2748
Position (kb)
3278
3279
3280 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3277.376 kb on + strand, within Shewana3_2746 at 3277.376 kb on + strand, within Shewana3_2746 at 3277.405 kb on - strand, within Shewana3_2746 at 3277.512 kb on - strand, within Shewana3_2746 at 3277.621 kb on - strand, within Shewana3_2746 at 3277.904 kb on - strand at 3277.904 kb on - strand at 3278.098 kb on - strand at 3278.129 kb on - strand at 3278.165 kb on + strand at 3278.212 kb on + strand at 3278.323 kb on - strand, within Shewana3_2747 at 3278.382 kb on + strand, within Shewana3_2747 at 3278.414 kb on - strand, within Shewana3_2747 at 3278.492 kb on - strand, within Shewana3_2747 at 3278.745 kb on + strand, within Shewana3_2747 at 3278.886 kb on + strand, within Shewana3_2747 at 3278.975 kb on - strand, within Shewana3_2747 at 3279.245 kb on + strand, within Shewana3_2747 at 3279.409 kb on + strand at 3279.552 kb on - strand at 3279.711 kb on + strand at 3279.793 kb on + strand, within Shewana3_2748 at 3279.903 kb on + strand, within Shewana3_2748 at 3280.119 kb on + strand, within Shewana3_2748 at 3280.119 kb on + strand, within Shewana3_2748 at 3280.127 kb on - strand, within Shewana3_2748 at 3280.127 kb on - strand, within Shewana3_2748 at 3280.150 kb on - strand, within Shewana3_2748 at 3280.181 kb on - strand, within Shewana3_2748 at 3280.224 kb on - strand, within Shewana3_2748 at 3280.272 kb on + strand, within Shewana3_2748 at 3280.304 kb on - strand, within Shewana3_2748 at 3280.368 kb on + strand, within Shewana3_2748
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 3,277,376 + Shewana3_2746 0.35 -0.1 3,277,376 + Shewana3_2746 0.35 -3.1 3,277,405 - Shewana3_2746 0.39 -4.3 3,277,512 - Shewana3_2746 0.52 -2.1 3,277,621 - Shewana3_2746 0.65 +0.4 3,277,904 - +1.6 3,277,904 - -0.9 3,278,098 - +0.2 3,278,129 - +0.7 3,278,165 + +0.0 3,278,212 + +0.4 3,278,323 - Shewana3_2747 0.14 +0.4 3,278,382 + Shewana3_2747 0.18 -1.7 3,278,414 - Shewana3_2747 0.21 +0.6 3,278,492 - Shewana3_2747 0.27 -1.6 3,278,745 + Shewana3_2747 0.47 +0.5 3,278,886 + Shewana3_2747 0.58 -1.5 3,278,975 - Shewana3_2747 0.64 +0.8 3,279,245 + Shewana3_2747 0.85 +0.1 3,279,409 + -1.4 3,279,552 - -0.7 3,279,711 + +1.2 3,279,793 + Shewana3_2748 0.11 -1.2 3,279,903 + Shewana3_2748 0.21 +0.4 3,280,119 + Shewana3_2748 0.40 +0.7 3,280,119 + Shewana3_2748 0.40 -1.0 3,280,127 - Shewana3_2748 0.41 -0.1 3,280,127 - Shewana3_2748 0.41 -2.9 3,280,150 - Shewana3_2748 0.43 +0.4 3,280,181 - Shewana3_2748 0.46 +1.4 3,280,224 - Shewana3_2748 0.49 -0.7 3,280,272 + Shewana3_2748 0.54 -1.4 3,280,304 - Shewana3_2748 0.57 +1.0 3,280,368 + Shewana3_2748 0.62 +0.2
Or see this region's nucleotide sequence