Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2696 and Shewana3_2697 are separated by 121 nucleotides Shewana3_2697 and Shewana3_2698 overlap by 11 nucleotides Shewana3_2698 and Shewana3_2699 are separated by 20 nucleotides
Shewana3_2696: Shewana3_2696 - major facilitator transporter (RefSeq), at 3,221,705 to 3,223,063
_2696
Shewana3_2697: Shewana3_2697 - N-acetylglucosamine 6-phosphate deacetylase (RefSeq), at 3,223,185 to 3,224,369
_2697
Shewana3_2698: Shewana3_2698 - N-acetylglucosamine kinase (RefSeq), at 3,224,359 to 3,225,285
_2698
Shewana3_2699: Shewana3_2699 - sugar isomerase (SIS) (RefSeq), at 3,225,306 to 3,226,466
_2699
Position (kb)
3223
3224
3225 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3222.198 kb on - strand, within Shewana3_2696 at 3222.250 kb on + strand, within Shewana3_2696 at 3222.282 kb on - strand, within Shewana3_2696 at 3222.660 kb on + strand, within Shewana3_2696 at 3222.660 kb on + strand, within Shewana3_2696 at 3222.697 kb on - strand, within Shewana3_2696 at 3223.192 kb on + strand at 3223.215 kb on - strand at 3223.215 kb on - strand at 3223.249 kb on - strand at 3223.352 kb on + strand, within Shewana3_2697 at 3223.375 kb on - strand, within Shewana3_2697 at 3223.745 kb on - strand, within Shewana3_2697 at 3223.814 kb on + strand, within Shewana3_2697 at 3223.883 kb on - strand, within Shewana3_2697 at 3224.324 kb on + strand at 3224.662 kb on - strand, within Shewana3_2698 at 3224.664 kb on + strand, within Shewana3_2698 at 3224.715 kb on + strand, within Shewana3_2698 at 3224.723 kb on - strand, within Shewana3_2698 at 3224.723 kb on - strand, within Shewana3_2698 at 3224.754 kb on - strand, within Shewana3_2698 at 3225.044 kb on - strand, within Shewana3_2698 at 3225.094 kb on - strand, within Shewana3_2698 at 3225.128 kb on - strand, within Shewana3_2698 at 3225.364 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 3,222,198 - Shewana3_2696 0.36 -0.5 3,222,250 + Shewana3_2696 0.40 -1.5 3,222,282 - Shewana3_2696 0.42 -1.8 3,222,660 + Shewana3_2696 0.70 +0.3 3,222,660 + Shewana3_2696 0.70 -1.8 3,222,697 - Shewana3_2696 0.73 -1.0 3,223,192 + -1.3 3,223,215 - -3.0 3,223,215 - +0.7 3,223,249 - -1.1 3,223,352 + Shewana3_2697 0.14 -1.5 3,223,375 - Shewana3_2697 0.16 -0.4 3,223,745 - Shewana3_2697 0.47 +0.3 3,223,814 + Shewana3_2697 0.53 -2.5 3,223,883 - Shewana3_2697 0.59 +0.7 3,224,324 + +0.9 3,224,662 - Shewana3_2698 0.33 +0.3 3,224,664 + Shewana3_2698 0.33 -1.2 3,224,715 + Shewana3_2698 0.38 +0.7 3,224,723 - Shewana3_2698 0.39 +1.2 3,224,723 - Shewana3_2698 0.39 +1.2 3,224,754 - Shewana3_2698 0.43 -1.4 3,225,044 - Shewana3_2698 0.74 -2.9 3,225,094 - Shewana3_2698 0.79 +0.0 3,225,128 - Shewana3_2698 0.83 -2.7 3,225,364 + +0.0
Or see this region's nucleotide sequence