Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2677

Experiment: L-Isoleucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2676 and Shewana3_2677 are separated by 68 nucleotidesShewana3_2677 and Shewana3_2678 are separated by 12 nucleotides Shewana3_2676: Shewana3_2676 - decaheme cytochrome c (RefSeq), at 3,198,135 to 3,200,087 _2676 Shewana3_2677: Shewana3_2677 - cytochrome C family protein (RefSeq), at 3,200,156 to 3,201,145 _2677 Shewana3_2678: Shewana3_2678 - outer membrane protein precursor MtrB (RefSeq), at 3,201,158 to 3,203,245 _2678 Position (kb) 3200 3201 3202Strain fitness (log2 ratio) -3 -2 -1 0 1at 3199.342 kb on - strand, within Shewana3_2676at 3199.350 kb on + strand, within Shewana3_2676at 3199.359 kb on + strand, within Shewana3_2676at 3199.442 kb on - strand, within Shewana3_2676at 3199.452 kb on + strand, within Shewana3_2676at 3199.589 kb on - strand, within Shewana3_2676at 3199.626 kb on - strand, within Shewana3_2676at 3199.628 kb on + strand, within Shewana3_2676at 3199.785 kb on + strand, within Shewana3_2676at 3199.806 kb on + strand, within Shewana3_2676at 3199.830 kb on + strand, within Shewana3_2676at 3199.852 kb on + strand, within Shewana3_2676at 3199.930 kb on - strandat 3200.044 kb on + strandat 3200.161 kb on - strandat 3200.288 kb on + strand, within Shewana3_2677at 3200.383 kb on + strand, within Shewana3_2677at 3200.391 kb on - strand, within Shewana3_2677at 3200.411 kb on - strand, within Shewana3_2677at 3200.459 kb on + strand, within Shewana3_2677at 3200.473 kb on - strand, within Shewana3_2677at 3200.605 kb on - strand, within Shewana3_2677at 3200.699 kb on - strand, within Shewana3_2677at 3200.767 kb on - strand, within Shewana3_2677at 3200.810 kb on + strand, within Shewana3_2677at 3200.876 kb on - strand, within Shewana3_2677at 3200.917 kb on + strand, within Shewana3_2677at 3200.951 kb on + strand, within Shewana3_2677at 3201.032 kb on + strand, within Shewana3_2677at 3201.147 kb on - strandat 3201.304 kb on - strandat 3201.338 kb on - strandat 3201.494 kb on - strand, within Shewana3_2678at 3201.507 kb on + strand, within Shewana3_2678at 3201.632 kb on - strand, within Shewana3_2678at 3201.738 kb on - strand, within Shewana3_2678at 3202.051 kb on + strand, within Shewana3_2678

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
remove
3,199,342 - Shewana3_2676 0.62 +0.4
3,199,350 + Shewana3_2676 0.62 +0.1
3,199,359 + Shewana3_2676 0.63 +0.3
3,199,442 - Shewana3_2676 0.67 +0.5
3,199,452 + Shewana3_2676 0.67 -1.6
3,199,589 - Shewana3_2676 0.74 -1.0
3,199,626 - Shewana3_2676 0.76 +0.4
3,199,628 + Shewana3_2676 0.76 -2.1
3,199,785 + Shewana3_2676 0.84 +0.2
3,199,806 + Shewana3_2676 0.86 -2.1
3,199,830 + Shewana3_2676 0.87 +0.7
3,199,852 + Shewana3_2676 0.88 -0.7
3,199,930 - +0.7
3,200,044 + +0.9
3,200,161 - -0.2
3,200,288 + Shewana3_2677 0.13 -2.1
3,200,383 + Shewana3_2677 0.23 +0.5
3,200,391 - Shewana3_2677 0.24 -0.1
3,200,411 - Shewana3_2677 0.26 -0.0
3,200,459 + Shewana3_2677 0.31 -0.5
3,200,473 - Shewana3_2677 0.32 -3.2
3,200,605 - Shewana3_2677 0.45 -2.3
3,200,699 - Shewana3_2677 0.55 -1.4
3,200,767 - Shewana3_2677 0.62 +0.5
3,200,810 + Shewana3_2677 0.66 +0.3
3,200,876 - Shewana3_2677 0.73 -1.5
3,200,917 + Shewana3_2677 0.77 -1.3
3,200,951 + Shewana3_2677 0.80 +1.2
3,201,032 + Shewana3_2677 0.88 +0.3
3,201,147 - +0.7
3,201,304 - -0.1
3,201,338 - +0.6
3,201,494 - Shewana3_2678 0.16 -1.1
3,201,507 + Shewana3_2678 0.17 +0.1
3,201,632 - Shewana3_2678 0.23 -0.8
3,201,738 - Shewana3_2678 0.28 -1.5
3,202,051 + Shewana3_2678 0.43 +0.1

Or see this region's nucleotide sequence