Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2676 and Shewana3_2677 are separated by 68 nucleotides Shewana3_2677 and Shewana3_2678 are separated by 12 nucleotides
Shewana3_2676: Shewana3_2676 - decaheme cytochrome c (RefSeq), at 3,198,135 to 3,200,087
_2676
Shewana3_2677: Shewana3_2677 - cytochrome C family protein (RefSeq), at 3,200,156 to 3,201,145
_2677
Shewana3_2678: Shewana3_2678 - outer membrane protein precursor MtrB (RefSeq), at 3,201,158 to 3,203,245
_2678
Position (kb)
3200
3201
3202 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3199.342 kb on - strand, within Shewana3_2676 at 3199.350 kb on + strand, within Shewana3_2676 at 3199.359 kb on + strand, within Shewana3_2676 at 3199.442 kb on - strand, within Shewana3_2676 at 3199.452 kb on + strand, within Shewana3_2676 at 3199.589 kb on - strand, within Shewana3_2676 at 3199.626 kb on - strand, within Shewana3_2676 at 3199.628 kb on + strand, within Shewana3_2676 at 3199.785 kb on + strand, within Shewana3_2676 at 3199.806 kb on + strand, within Shewana3_2676 at 3199.830 kb on + strand, within Shewana3_2676 at 3199.852 kb on + strand, within Shewana3_2676 at 3199.930 kb on - strand at 3200.044 kb on + strand at 3200.161 kb on - strand at 3200.288 kb on + strand, within Shewana3_2677 at 3200.383 kb on + strand, within Shewana3_2677 at 3200.391 kb on - strand, within Shewana3_2677 at 3200.411 kb on - strand, within Shewana3_2677 at 3200.459 kb on + strand, within Shewana3_2677 at 3200.473 kb on - strand, within Shewana3_2677 at 3200.605 kb on - strand, within Shewana3_2677 at 3200.699 kb on - strand, within Shewana3_2677 at 3200.767 kb on - strand, within Shewana3_2677 at 3200.810 kb on + strand, within Shewana3_2677 at 3200.876 kb on - strand, within Shewana3_2677 at 3200.917 kb on + strand, within Shewana3_2677 at 3200.951 kb on + strand, within Shewana3_2677 at 3201.032 kb on + strand, within Shewana3_2677 at 3201.147 kb on - strand at 3201.304 kb on - strand at 3201.338 kb on - strand at 3201.494 kb on - strand, within Shewana3_2678 at 3201.507 kb on + strand, within Shewana3_2678 at 3201.632 kb on - strand, within Shewana3_2678 at 3201.738 kb on - strand, within Shewana3_2678 at 3202.051 kb on + strand, within Shewana3_2678
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 3,199,342 - Shewana3_2676 0.62 +0.4 3,199,350 + Shewana3_2676 0.62 +0.1 3,199,359 + Shewana3_2676 0.63 +0.3 3,199,442 - Shewana3_2676 0.67 +0.5 3,199,452 + Shewana3_2676 0.67 -1.6 3,199,589 - Shewana3_2676 0.74 -1.0 3,199,626 - Shewana3_2676 0.76 +0.4 3,199,628 + Shewana3_2676 0.76 -2.1 3,199,785 + Shewana3_2676 0.84 +0.2 3,199,806 + Shewana3_2676 0.86 -2.1 3,199,830 + Shewana3_2676 0.87 +0.7 3,199,852 + Shewana3_2676 0.88 -0.7 3,199,930 - +0.7 3,200,044 + +0.9 3,200,161 - -0.2 3,200,288 + Shewana3_2677 0.13 -2.1 3,200,383 + Shewana3_2677 0.23 +0.5 3,200,391 - Shewana3_2677 0.24 -0.1 3,200,411 - Shewana3_2677 0.26 -0.0 3,200,459 + Shewana3_2677 0.31 -0.5 3,200,473 - Shewana3_2677 0.32 -3.2 3,200,605 - Shewana3_2677 0.45 -2.3 3,200,699 - Shewana3_2677 0.55 -1.4 3,200,767 - Shewana3_2677 0.62 +0.5 3,200,810 + Shewana3_2677 0.66 +0.3 3,200,876 - Shewana3_2677 0.73 -1.5 3,200,917 + Shewana3_2677 0.77 -1.3 3,200,951 + Shewana3_2677 0.80 +1.2 3,201,032 + Shewana3_2677 0.88 +0.3 3,201,147 - +0.7 3,201,304 - -0.1 3,201,338 - +0.6 3,201,494 - Shewana3_2678 0.16 -1.1 3,201,507 + Shewana3_2678 0.17 +0.1 3,201,632 - Shewana3_2678 0.23 -0.8 3,201,738 - Shewana3_2678 0.28 -1.5 3,202,051 + Shewana3_2678 0.43 +0.1
Or see this region's nucleotide sequence