Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2522

Experiment: L-Isoleucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2521 and Shewana3_2522 are separated by 60 nucleotidesShewana3_2522 and Shewana3_2523 are separated by 175 nucleotides Shewana3_2521: Shewana3_2521 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,014,080 to 3,015,681 _2521 Shewana3_2522: Shewana3_2522 - multi-sensor hybrid histidine kinase (RefSeq), at 3,015,742 to 3,019,182 _2522 Shewana3_2523: Shewana3_2523 - acetyl-CoA synthetase (RefSeq), at 3,019,358 to 3,021,310 _2523 Position (kb) 3015 3016 3017 3018 3019 3020Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3014.759 kb on - strand, within Shewana3_2521at 3015.000 kb on + strand, within Shewana3_2521at 3015.194 kb on - strand, within Shewana3_2521at 3015.721 kb on + strandat 3015.752 kb on + strandat 3015.829 kb on - strandat 3015.849 kb on + strandat 3016.069 kb on - strandat 3016.153 kb on - strand, within Shewana3_2522at 3016.216 kb on - strand, within Shewana3_2522at 3016.223 kb on - strand, within Shewana3_2522at 3016.225 kb on + strand, within Shewana3_2522at 3016.276 kb on + strand, within Shewana3_2522at 3016.289 kb on - strand, within Shewana3_2522at 3016.324 kb on + strand, within Shewana3_2522at 3016.380 kb on - strand, within Shewana3_2522at 3016.574 kb on - strand, within Shewana3_2522at 3016.586 kb on + strand, within Shewana3_2522at 3016.594 kb on - strand, within Shewana3_2522at 3016.719 kb on - strand, within Shewana3_2522at 3016.719 kb on - strand, within Shewana3_2522at 3017.061 kb on + strand, within Shewana3_2522at 3017.187 kb on - strand, within Shewana3_2522at 3017.477 kb on - strand, within Shewana3_2522at 3017.732 kb on + strand, within Shewana3_2522at 3017.798 kb on - strand, within Shewana3_2522at 3017.927 kb on + strand, within Shewana3_2522at 3018.149 kb on - strand, within Shewana3_2522at 3018.240 kb on - strand, within Shewana3_2522at 3018.383 kb on - strand, within Shewana3_2522at 3018.397 kb on - strand, within Shewana3_2522at 3018.407 kb on + strand, within Shewana3_2522at 3018.446 kb on + strand, within Shewana3_2522at 3018.469 kb on + strand, within Shewana3_2522at 3018.796 kb on + strand, within Shewana3_2522at 3018.822 kb on + strand, within Shewana3_2522at 3018.850 kb on - strandat 3018.944 kb on - strandat 3019.117 kb on + strandat 3019.507 kb on + strandat 3019.886 kb on - strand, within Shewana3_2523at 3020.167 kb on + strand, within Shewana3_2523at 3020.167 kb on + strand, within Shewana3_2523

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
remove
3,014,759 - Shewana3_2521 0.42 +0.7
3,015,000 + Shewana3_2521 0.57 -1.8
3,015,194 - Shewana3_2521 0.70 +1.3
3,015,721 + +0.6
3,015,752 + +0.1
3,015,829 - -2.1
3,015,849 + +0.0
3,016,069 - -0.3
3,016,153 - Shewana3_2522 0.12 +0.1
3,016,216 - Shewana3_2522 0.14 -0.7
3,016,223 - Shewana3_2522 0.14 -0.2
3,016,225 + Shewana3_2522 0.14 -1.6
3,016,276 + Shewana3_2522 0.16 -1.2
3,016,289 - Shewana3_2522 0.16 -0.6
3,016,324 + Shewana3_2522 0.17 -2.2
3,016,380 - Shewana3_2522 0.19 -0.3
3,016,574 - Shewana3_2522 0.24 -0.2
3,016,586 + Shewana3_2522 0.25 -0.2
3,016,594 - Shewana3_2522 0.25 -4.2
3,016,719 - Shewana3_2522 0.28 -0.8
3,016,719 - Shewana3_2522 0.28 -2.9
3,017,061 + Shewana3_2522 0.38 +0.4
3,017,187 - Shewana3_2522 0.42 +0.5
3,017,477 - Shewana3_2522 0.50 -1.0
3,017,732 + Shewana3_2522 0.58 -0.9
3,017,798 - Shewana3_2522 0.60 +0.3
3,017,927 + Shewana3_2522 0.63 -2.8
3,018,149 - Shewana3_2522 0.70 -0.2
3,018,240 - Shewana3_2522 0.73 -0.3
3,018,383 - Shewana3_2522 0.77 -1.1
3,018,397 - Shewana3_2522 0.77 -2.8
3,018,407 + Shewana3_2522 0.77 -2.5
3,018,446 + Shewana3_2522 0.79 -0.3
3,018,469 + Shewana3_2522 0.79 -2.6
3,018,796 + Shewana3_2522 0.89 -1.6
3,018,822 + Shewana3_2522 0.90 -1.4
3,018,850 - +0.0
3,018,944 - -0.4
3,019,117 + +0.3
3,019,507 + +0.4
3,019,886 - Shewana3_2523 0.27 +0.2
3,020,167 + Shewana3_2523 0.41 -2.7
3,020,167 + Shewana3_2523 0.41 +0.2

Or see this region's nucleotide sequence