Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2448

Experiment: L-Isoleucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2447 and Shewana3_2448 are separated by 471 nucleotidesShewana3_2448 and Shewana3_2449 are separated by 398 nucleotides Shewana3_2447: Shewana3_2447 - adenine phosphoribosyltransferase (RefSeq), at 2,936,003 to 2,936,554 _2447 Shewana3_2448: Shewana3_2448 - hypothetical protein (RefSeq), at 2,937,026 to 2,937,394 _2448 Shewana3_2449: Shewana3_2449 - hypothetical protein (RefSeq), at 2,937,793 to 2,938,533 _2449 Position (kb) 2937 2938Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2936.152 kb on - strand, within Shewana3_2447at 2936.536 kb on - strandat 2936.674 kb on + strandat 2937.174 kb on - strand, within Shewana3_2448at 2937.191 kb on + strand, within Shewana3_2448at 2937.194 kb on - strand, within Shewana3_2448at 2937.344 kb on + strand, within Shewana3_2448at 2937.476 kb on - strandat 2937.476 kb on - strandat 2937.476 kb on - strandat 2937.476 kb on - strandat 2937.644 kb on + strandat 2937.644 kb on + strandat 2937.652 kb on - strandat 2938.097 kb on - strand, within Shewana3_2449at 2938.169 kb on - strand, within Shewana3_2449at 2938.199 kb on + strand, within Shewana3_2449

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
remove
2,936,152 - Shewana3_2447 0.27 -0.6
2,936,536 - -0.4
2,936,674 + +0.5
2,937,174 - Shewana3_2448 0.40 -1.0
2,937,191 + Shewana3_2448 0.45 +1.8
2,937,194 - Shewana3_2448 0.46 +0.3
2,937,344 + Shewana3_2448 0.86 -2.7
2,937,476 - -4.6
2,937,476 - +0.4
2,937,476 - +1.3
2,937,476 - -0.7
2,937,644 + +0.1
2,937,644 + +0.3
2,937,652 - +0.2
2,938,097 - Shewana3_2449 0.41 +0.3
2,938,169 - Shewana3_2449 0.51 -1.4
2,938,199 + Shewana3_2449 0.55 +1.1

Or see this region's nucleotide sequence