Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2340

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2339 and Shewana3_2340 are separated by 70 nucleotidesShewana3_2340 and Shewana3_2341 are separated by 11 nucleotides Shewana3_2339: Shewana3_2339 - glutathione synthase (RefSeq), at 2,812,988 to 2,814,445 _2339 Shewana3_2340: Shewana3_2340 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 2,814,516 to 2,815,220 _2340 Shewana3_2341: Shewana3_2341 - molybdopterin oxidoreductase (RefSeq), at 2,815,232 to 2,817,796 _2341 Position (kb) 2814 2815 2816Strain fitness (log2 ratio) -1 0 1at 2813.738 kb on - strand, within Shewana3_2339at 2813.945 kb on + strand, within Shewana3_2339at 2813.964 kb on - strand, within Shewana3_2339at 2813.966 kb on - strand, within Shewana3_2339at 2814.061 kb on + strand, within Shewana3_2339at 2814.071 kb on - strand, within Shewana3_2339at 2814.192 kb on + strand, within Shewana3_2339at 2814.213 kb on - strand, within Shewana3_2339at 2814.598 kb on - strand, within Shewana3_2340at 2814.674 kb on - strand, within Shewana3_2340at 2814.791 kb on + strand, within Shewana3_2340at 2814.868 kb on - strand, within Shewana3_2340at 2814.868 kb on - strand, within Shewana3_2340at 2814.868 kb on - strand, within Shewana3_2340at 2814.868 kb on - strand, within Shewana3_2340at 2815.061 kb on + strand, within Shewana3_2340at 2815.063 kb on - strand, within Shewana3_2340at 2815.069 kb on - strand, within Shewana3_2340at 2815.101 kb on + strand, within Shewana3_2340at 2815.238 kb on - strandat 2815.885 kb on - strand, within Shewana3_2341at 2815.908 kb on - strand, within Shewana3_2341at 2816.142 kb on + strand, within Shewana3_2341

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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2,813,738 - Shewana3_2339 0.51 +1.2
2,813,945 + Shewana3_2339 0.66 +0.5
2,813,964 - Shewana3_2339 0.67 +0.4
2,813,966 - Shewana3_2339 0.67 +0.9
2,814,061 + Shewana3_2339 0.74 +0.6
2,814,071 - Shewana3_2339 0.74 +1.3
2,814,192 + Shewana3_2339 0.83 -0.0
2,814,213 - Shewana3_2339 0.84 +0.9
2,814,598 - Shewana3_2340 0.12 +0.2
2,814,674 - Shewana3_2340 0.22 -0.1
2,814,791 + Shewana3_2340 0.39 +0.3
2,814,868 - Shewana3_2340 0.50 +0.2
2,814,868 - Shewana3_2340 0.50 +0.9
2,814,868 - Shewana3_2340 0.50 +0.7
2,814,868 - Shewana3_2340 0.50 +0.3
2,815,061 + Shewana3_2340 0.77 +0.2
2,815,063 - Shewana3_2340 0.78 +0.2
2,815,069 - Shewana3_2340 0.78 +1.1
2,815,101 + Shewana3_2340 0.83 +0.8
2,815,238 - +0.9
2,815,885 - Shewana3_2341 0.25 -1.5
2,815,908 - Shewana3_2341 0.26 -0.1
2,816,142 + Shewana3_2341 0.35 +0.6

Or see this region's nucleotide sequence