Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2321

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdef and Shewana3_2320 are separated by 192 nucleotidesShewana3_2320 and Shewana3_2321 are separated by 129 nucleotidesShewana3_2321 and Shewana3_2322 are separated by 163 nucleotides Shewana3_2319: def - peptide deformylase (RefSeq), at 2,792,153 to 2,792,644 def Shewana3_2320: Shewana3_2320 - methylated-DNA-(protein)-cysteine S-methyltransferase (RefSeq), at 2,792,837 to 2,793,295 _2320 Shewana3_2321: Shewana3_2321 - hypothetical protein (RefSeq), at 2,793,425 to 2,794,237 _2321 Shewana3_2322: Shewana3_2322 - glutamine amidotransferase, class-II (RefSeq), at 2,794,401 to 2,795,240 _2322 Position (kb) 2793 2794 2795Strain fitness (log2 ratio) -2 -1 0 1at 2792.903 kb on - strand, within Shewana3_2320at 2792.913 kb on - strand, within Shewana3_2320at 2793.055 kb on - strand, within Shewana3_2320at 2793.072 kb on + strand, within Shewana3_2320at 2793.215 kb on - strand, within Shewana3_2320at 2793.327 kb on - strandat 2793.349 kb on - strandat 2793.473 kb on - strandat 2793.717 kb on - strand, within Shewana3_2321at 2793.723 kb on + strand, within Shewana3_2321at 2793.765 kb on + strand, within Shewana3_2321at 2793.928 kb on - strand, within Shewana3_2321at 2793.990 kb on - strand, within Shewana3_2321at 2794.043 kb on + strand, within Shewana3_2321at 2794.306 kb on + strandat 2794.851 kb on - strand, within Shewana3_2322at 2794.937 kb on - strand, within Shewana3_2322at 2794.977 kb on - strand, within Shewana3_2322at 2795.109 kb on - strand, within Shewana3_2322

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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2,792,903 - Shewana3_2320 0.14 +0.4
2,792,913 - Shewana3_2320 0.17 +0.3
2,793,055 - Shewana3_2320 0.47 -1.5
2,793,072 + Shewana3_2320 0.51 -0.1
2,793,215 - Shewana3_2320 0.82 -0.2
2,793,327 - -1.5
2,793,349 - -0.0
2,793,473 - -0.9
2,793,717 - Shewana3_2321 0.36 +0.5
2,793,723 + Shewana3_2321 0.37 +0.6
2,793,765 + Shewana3_2321 0.42 -1.2
2,793,928 - Shewana3_2321 0.62 +1.2
2,793,990 - Shewana3_2321 0.69 -0.2
2,794,043 + Shewana3_2321 0.76 -0.6
2,794,306 + -1.9
2,794,851 - Shewana3_2322 0.54 -0.3
2,794,937 - Shewana3_2322 0.64 +0.5
2,794,977 - Shewana3_2322 0.69 +0.6
2,795,109 - Shewana3_2322 0.84 -2.0

Or see this region's nucleotide sequence