Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1566

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1565 and Shewana3_1566 are separated by 128 nucleotidesShewana3_1566 and Shewana3_1567 are separated by 241 nucleotides Shewana3_1565: Shewana3_1565 - hypothetical protein (RefSeq), at 1,827,650 to 1,830,049 _1565 Shewana3_1566: Shewana3_1566 - putative sulfate transport protein CysZ (RefSeq), at 1,830,178 to 1,830,957 _1566 Shewana3_1567: Shewana3_1567 - chromosome segregation protein SMC (RefSeq), at 1,831,199 to 1,834,627 _1567 Position (kb) 1830 1831Strain fitness (log2 ratio) -3 -2 -1 0 1at 1829.672 kb on - strand, within Shewana3_1565at 1829.711 kb on - strand, within Shewana3_1565at 1829.728 kb on - strand, within Shewana3_1565at 1829.842 kb on - strandat 1830.638 kb on + strand, within Shewana3_1566at 1830.638 kb on + strand, within Shewana3_1566at 1830.669 kb on - strand, within Shewana3_1566at 1830.699 kb on + strand, within Shewana3_1566at 1830.826 kb on - strand, within Shewana3_1566at 1830.836 kb on - strand, within Shewana3_1566at 1830.888 kb on + strandat 1830.926 kb on - strandat 1831.317 kb on - strandat 1831.610 kb on - strand, within Shewana3_1567at 1831.683 kb on + strand, within Shewana3_1567at 1831.729 kb on - strand, within Shewana3_1567at 1831.751 kb on + strand, within Shewana3_1567at 1831.916 kb on - strand, within Shewana3_1567at 1831.956 kb on + strand, within Shewana3_1567

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,829,672 - Shewana3_1565 0.84 -1.6
1,829,711 - Shewana3_1565 0.86 -0.7
1,829,728 - Shewana3_1565 0.87 +0.3
1,829,842 - +0.4
1,830,638 + Shewana3_1566 0.59 -0.2
1,830,638 + Shewana3_1566 0.59 -1.8
1,830,669 - Shewana3_1566 0.63 -2.1
1,830,699 + Shewana3_1566 0.67 -2.9
1,830,826 - Shewana3_1566 0.83 -1.4
1,830,836 - Shewana3_1566 0.84 -0.3
1,830,888 + +0.2
1,830,926 - +0.1
1,831,317 - -0.7
1,831,610 - Shewana3_1567 0.12 +0.7
1,831,683 + Shewana3_1567 0.14 +1.4
1,831,729 - Shewana3_1567 0.15 +0.7
1,831,751 + Shewana3_1567 0.16 +0.4
1,831,916 - Shewana3_1567 0.21 -0.3
1,831,956 + Shewana3_1567 0.22 -3.2

Or see this region's nucleotide sequence