Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1565 and Shewana3_1566 are separated by 128 nucleotides Shewana3_1566 and Shewana3_1567 are separated by 241 nucleotides
Shewana3_1565: Shewana3_1565 - hypothetical protein (RefSeq), at 1,827,650 to 1,830,049
_1565
Shewana3_1566: Shewana3_1566 - putative sulfate transport protein CysZ (RefSeq), at 1,830,178 to 1,830,957
_1566
Shewana3_1567: Shewana3_1567 - chromosome segregation protein SMC (RefSeq), at 1,831,199 to 1,834,627
_1567
Position (kb)
1830
1831 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1829.672 kb on - strand, within Shewana3_1565 at 1829.711 kb on - strand, within Shewana3_1565 at 1829.728 kb on - strand, within Shewana3_1565 at 1829.842 kb on - strand at 1830.638 kb on + strand, within Shewana3_1566 at 1830.638 kb on + strand, within Shewana3_1566 at 1830.669 kb on - strand, within Shewana3_1566 at 1830.699 kb on + strand, within Shewana3_1566 at 1830.826 kb on - strand, within Shewana3_1566 at 1830.836 kb on - strand, within Shewana3_1566 at 1830.888 kb on + strand at 1830.926 kb on - strand at 1831.317 kb on - strand at 1831.610 kb on - strand, within Shewana3_1567 at 1831.683 kb on + strand, within Shewana3_1567 at 1831.729 kb on - strand, within Shewana3_1567 at 1831.751 kb on + strand, within Shewana3_1567 at 1831.916 kb on - strand, within Shewana3_1567 at 1831.956 kb on + strand, within Shewana3_1567
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 1,829,672 - Shewana3_1565 0.84 -1.6 1,829,711 - Shewana3_1565 0.86 -0.7 1,829,728 - Shewana3_1565 0.87 +0.3 1,829,842 - +0.4 1,830,638 + Shewana3_1566 0.59 -0.2 1,830,638 + Shewana3_1566 0.59 -1.8 1,830,669 - Shewana3_1566 0.63 -2.1 1,830,699 + Shewana3_1566 0.67 -2.9 1,830,826 - Shewana3_1566 0.83 -1.4 1,830,836 - Shewana3_1566 0.84 -0.3 1,830,888 + +0.2 1,830,926 - +0.1 1,831,317 - -0.7 1,831,610 - Shewana3_1567 0.12 +0.7 1,831,683 + Shewana3_1567 0.14 +1.4 1,831,729 - Shewana3_1567 0.15 +0.7 1,831,751 + Shewana3_1567 0.16 +0.4 1,831,916 - Shewana3_1567 0.21 -0.3 1,831,956 + Shewana3_1567 0.22 -3.2
Or see this region's nucleotide sequence