Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1504 and Shewana3_1505 overlap by 1 nucleotides Shewana3_1505 and Shewana3_1506 are separated by 160 nucleotides Shewana3_1506 and Shewana3_1507 are separated by 88 nucleotides
Shewana3_1504: Shewana3_1504 - YciI-like protein (RefSeq), at 1,751,487 to 1,751,786
_1504
Shewana3_1505: Shewana3_1505 - intracellular septation protein A (RefSeq), at 1,751,786 to 1,752,331
_1505
Shewana3_1506: Shewana3_1506 - ferric iron reductase (RefSeq), at 1,752,492 to 1,753,526
_1506
Shewana3_1507: Shewana3_1507 - TonB-dependent siderophore receptor (RefSeq), at 1,753,615 to 1,755,828
_1507
Position (kb)
1752
1753
1754 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1751.568 kb on + strand, within Shewana3_1504 at 1751.576 kb on - strand, within Shewana3_1504 at 1751.576 kb on - strand, within Shewana3_1504 at 1751.576 kb on - strand, within Shewana3_1504 at 1751.666 kb on - strand, within Shewana3_1504 at 1752.398 kb on + strand at 1752.490 kb on + strand at 1752.498 kb on - strand at 1752.498 kb on - strand at 1752.498 kb on - strand at 1752.657 kb on - strand, within Shewana3_1506 at 1752.772 kb on + strand, within Shewana3_1506 at 1753.022 kb on + strand, within Shewana3_1506 at 1753.074 kb on + strand, within Shewana3_1506 at 1753.110 kb on + strand, within Shewana3_1506 at 1753.123 kb on + strand, within Shewana3_1506 at 1753.131 kb on - strand, within Shewana3_1506 at 1753.215 kb on - strand, within Shewana3_1506 at 1753.429 kb on - strand at 1753.497 kb on + strand at 1753.600 kb on + strand at 1753.797 kb on - strand at 1753.810 kb on + strand at 1753.818 kb on - strand at 1754.041 kb on + strand, within Shewana3_1507 at 1754.098 kb on + strand, within Shewana3_1507 at 1754.110 kb on - strand, within Shewana3_1507 at 1754.157 kb on + strand, within Shewana3_1507 at 1754.252 kb on - strand, within Shewana3_1507 at 1754.349 kb on + strand, within Shewana3_1507
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 1,751,568 + Shewana3_1504 0.27 -2.8 1,751,576 - Shewana3_1504 0.30 +0.2 1,751,576 - Shewana3_1504 0.30 -0.2 1,751,576 - Shewana3_1504 0.30 -1.9 1,751,666 - Shewana3_1504 0.60 +0.6 1,752,398 + -1.9 1,752,490 + -1.5 1,752,498 - +0.6 1,752,498 - -1.1 1,752,498 - -1.2 1,752,657 - Shewana3_1506 0.16 +0.6 1,752,772 + Shewana3_1506 0.27 +0.9 1,753,022 + Shewana3_1506 0.51 +1.2 1,753,074 + Shewana3_1506 0.56 -0.8 1,753,110 + Shewana3_1506 0.60 +0.5 1,753,123 + Shewana3_1506 0.61 +0.3 1,753,131 - Shewana3_1506 0.62 -1.8 1,753,215 - Shewana3_1506 0.70 +0.7 1,753,429 - +1.0 1,753,497 + +1.0 1,753,600 + -3.0 1,753,797 - +0.9 1,753,810 + +0.2 1,753,818 - -2.0 1,754,041 + Shewana3_1507 0.19 -1.5 1,754,098 + Shewana3_1507 0.22 +0.2 1,754,110 - Shewana3_1507 0.22 +1.2 1,754,157 + Shewana3_1507 0.24 +0.6 1,754,252 - Shewana3_1507 0.29 -0.8 1,754,349 + Shewana3_1507 0.33 +0.2
Or see this region's nucleotide sequence