Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1506

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1504 and Shewana3_1505 overlap by 1 nucleotidesShewana3_1505 and Shewana3_1506 are separated by 160 nucleotidesShewana3_1506 and Shewana3_1507 are separated by 88 nucleotides Shewana3_1504: Shewana3_1504 - YciI-like protein (RefSeq), at 1,751,487 to 1,751,786 _1504 Shewana3_1505: Shewana3_1505 - intracellular septation protein A (RefSeq), at 1,751,786 to 1,752,331 _1505 Shewana3_1506: Shewana3_1506 - ferric iron reductase (RefSeq), at 1,752,492 to 1,753,526 _1506 Shewana3_1507: Shewana3_1507 - TonB-dependent siderophore receptor (RefSeq), at 1,753,615 to 1,755,828 _1507 Position (kb) 1752 1753 1754Strain fitness (log2 ratio) -3 -2 -1 0 1at 1751.568 kb on + strand, within Shewana3_1504at 1751.576 kb on - strand, within Shewana3_1504at 1751.576 kb on - strand, within Shewana3_1504at 1751.576 kb on - strand, within Shewana3_1504at 1751.666 kb on - strand, within Shewana3_1504at 1752.398 kb on + strandat 1752.490 kb on + strandat 1752.498 kb on - strandat 1752.498 kb on - strandat 1752.498 kb on - strandat 1752.657 kb on - strand, within Shewana3_1506at 1752.772 kb on + strand, within Shewana3_1506at 1753.022 kb on + strand, within Shewana3_1506at 1753.074 kb on + strand, within Shewana3_1506at 1753.110 kb on + strand, within Shewana3_1506at 1753.123 kb on + strand, within Shewana3_1506at 1753.131 kb on - strand, within Shewana3_1506at 1753.215 kb on - strand, within Shewana3_1506at 1753.429 kb on - strandat 1753.497 kb on + strandat 1753.600 kb on + strandat 1753.797 kb on - strandat 1753.810 kb on + strandat 1753.818 kb on - strandat 1754.041 kb on + strand, within Shewana3_1507at 1754.098 kb on + strand, within Shewana3_1507at 1754.110 kb on - strand, within Shewana3_1507at 1754.157 kb on + strand, within Shewana3_1507at 1754.252 kb on - strand, within Shewana3_1507at 1754.349 kb on + strand, within Shewana3_1507

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,751,568 + Shewana3_1504 0.27 -2.8
1,751,576 - Shewana3_1504 0.30 +0.2
1,751,576 - Shewana3_1504 0.30 -0.2
1,751,576 - Shewana3_1504 0.30 -1.9
1,751,666 - Shewana3_1504 0.60 +0.6
1,752,398 + -1.9
1,752,490 + -1.5
1,752,498 - +0.6
1,752,498 - -1.1
1,752,498 - -1.2
1,752,657 - Shewana3_1506 0.16 +0.6
1,752,772 + Shewana3_1506 0.27 +0.9
1,753,022 + Shewana3_1506 0.51 +1.2
1,753,074 + Shewana3_1506 0.56 -0.8
1,753,110 + Shewana3_1506 0.60 +0.5
1,753,123 + Shewana3_1506 0.61 +0.3
1,753,131 - Shewana3_1506 0.62 -1.8
1,753,215 - Shewana3_1506 0.70 +0.7
1,753,429 - +1.0
1,753,497 + +1.0
1,753,600 + -3.0
1,753,797 - +0.9
1,753,810 + +0.2
1,753,818 - -2.0
1,754,041 + Shewana3_1507 0.19 -1.5
1,754,098 + Shewana3_1507 0.22 +0.2
1,754,110 - Shewana3_1507 0.22 +1.2
1,754,157 + Shewana3_1507 0.24 +0.6
1,754,252 - Shewana3_1507 0.29 -0.8
1,754,349 + Shewana3_1507 0.33 +0.2

Or see this region's nucleotide sequence