Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1471 and Shewana3_1472 are separated by 55 nucleotides Shewana3_1472 and Shewana3_1473 are separated by 3 nucleotides Shewana3_1473 and Shewana3_1474 are separated by 203 nucleotides
Shewana3_1471: Shewana3_1471 - ATP-NAD/AcoX kinase (RefSeq), at 1,710,221 to 1,711,363
_1471
Shewana3_1472: Shewana3_1472 - hypothetical protein (RefSeq), at 1,711,419 to 1,711,700
_1472
Shewana3_1473: Shewana3_1473 - tRNA/rRNA methyltransferase (SpoU) (RefSeq), at 1,711,704 to 1,712,312
_1473
Shewana3_1474: Shewana3_1474 - FAD dependent oxidoreductase (RefSeq), at 1,712,516 to 1,714,438
_1474
Position (kb)
1711
1712 Strain fitness (log2 ratio)
-2
-1
0
1 at 1710.510 kb on - strand, within Shewana3_1471 at 1710.648 kb on + strand, within Shewana3_1471 at 1710.675 kb on + strand, within Shewana3_1471 at 1710.690 kb on - strand, within Shewana3_1471 at 1710.781 kb on + strand, within Shewana3_1471 at 1710.785 kb on + strand, within Shewana3_1471 at 1710.833 kb on - strand, within Shewana3_1471 at 1710.979 kb on + strand, within Shewana3_1471 at 1711.004 kb on - strand, within Shewana3_1471 at 1711.068 kb on + strand, within Shewana3_1471 at 1711.438 kb on - strand at 1711.449 kb on - strand, within Shewana3_1472 at 1711.464 kb on + strand, within Shewana3_1472 at 1711.597 kb on + strand, within Shewana3_1472 at 1711.597 kb on + strand, within Shewana3_1472 at 1711.858 kb on - strand, within Shewana3_1473 at 1711.906 kb on - strand, within Shewana3_1473 at 1711.935 kb on + strand, within Shewana3_1473 at 1711.983 kb on + strand, within Shewana3_1473 at 1712.058 kb on + strand, within Shewana3_1473 at 1712.217 kb on - strand, within Shewana3_1473 at 1712.227 kb on - strand, within Shewana3_1473 at 1712.314 kb on - strand at 1712.321 kb on - strand at 1712.408 kb on - strand at 1712.665 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 1,710,510 - Shewana3_1471 0.25 +0.4 1,710,648 + Shewana3_1471 0.37 +0.6 1,710,675 + Shewana3_1471 0.40 +0.7 1,710,690 - Shewana3_1471 0.41 +0.6 1,710,781 + Shewana3_1471 0.49 +0.3 1,710,785 + Shewana3_1471 0.49 +0.7 1,710,833 - Shewana3_1471 0.54 -0.9 1,710,979 + Shewana3_1471 0.66 +0.9 1,711,004 - Shewana3_1471 0.69 +0.9 1,711,068 + Shewana3_1471 0.74 -1.1 1,711,438 - -2.4 1,711,449 - Shewana3_1472 0.11 -0.3 1,711,464 + Shewana3_1472 0.16 -2.7 1,711,597 + Shewana3_1472 0.63 -2.1 1,711,597 + Shewana3_1472 0.63 -2.7 1,711,858 - Shewana3_1473 0.25 -1.5 1,711,906 - Shewana3_1473 0.33 -1.7 1,711,935 + Shewana3_1473 0.38 +0.6 1,711,983 + Shewana3_1473 0.46 +0.7 1,712,058 + Shewana3_1473 0.58 -1.3 1,712,217 - Shewana3_1473 0.84 +0.9 1,712,227 - Shewana3_1473 0.86 +0.4 1,712,314 - -1.6 1,712,321 - +0.3 1,712,408 - -2.6 1,712,665 + +0.3
Or see this region's nucleotide sequence