Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1275 and Shewana3_1276 are separated by 84 nucleotides Shewana3_1276 and Shewana3_1277 overlap by 4 nucleotides
Shewana3_1275: Shewana3_1275 - IclR family transcriptional regulator (RefSeq), at 1,486,964 to 1,487,641
_1275
Shewana3_1276: Shewana3_1276 - hypothetical protein (RefSeq), at 1,487,726 to 1,488,133
_1276
Shewana3_1277: Shewana3_1277 - major facilitator transporter (RefSeq), at 1,488,130 to 1,489,353
_1277
Position (kb)
1487
1488
1489 Strain fitness (log2 ratio)
-2
-1
0
1 at 1486.730 kb on - strand at 1487.036 kb on - strand, within Shewana3_1275 at 1487.051 kb on + strand, within Shewana3_1275 at 1487.070 kb on - strand, within Shewana3_1275 at 1487.187 kb on + strand, within Shewana3_1275 at 1487.188 kb on - strand, within Shewana3_1275 at 1487.293 kb on - strand, within Shewana3_1275 at 1487.463 kb on - strand, within Shewana3_1275 at 1487.626 kb on - strand at 1487.760 kb on + strand at 1487.805 kb on - strand, within Shewana3_1276 at 1487.877 kb on + strand, within Shewana3_1276 at 1487.915 kb on + strand, within Shewana3_1276 at 1487.915 kb on + strand, within Shewana3_1276 at 1488.010 kb on - strand, within Shewana3_1276 at 1488.280 kb on + strand, within Shewana3_1277 at 1488.330 kb on - strand, within Shewana3_1277 at 1488.330 kb on - strand, within Shewana3_1277 at 1488.330 kb on - strand, within Shewana3_1277 at 1488.416 kb on + strand, within Shewana3_1277 at 1488.441 kb on + strand, within Shewana3_1277 at 1488.558 kb on - strand, within Shewana3_1277 at 1488.558 kb on - strand, within Shewana3_1277 at 1488.588 kb on - strand, within Shewana3_1277 at 1488.588 kb on - strand, within Shewana3_1277 at 1488.649 kb on + strand, within Shewana3_1277 at 1488.668 kb on - strand, within Shewana3_1277 at 1488.690 kb on + strand, within Shewana3_1277 at 1488.868 kb on - strand, within Shewana3_1277 at 1488.961 kb on - strand, within Shewana3_1277 at 1489.053 kb on + strand, within Shewana3_1277 at 1489.105 kb on - strand, within Shewana3_1277
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 1,486,730 - +0.3 1,487,036 - Shewana3_1275 0.11 +0.7 1,487,051 + Shewana3_1275 0.13 +0.1 1,487,070 - Shewana3_1275 0.16 -0.3 1,487,187 + Shewana3_1275 0.33 +0.8 1,487,188 - Shewana3_1275 0.33 +0.7 1,487,293 - Shewana3_1275 0.49 +1.0 1,487,463 - Shewana3_1275 0.74 +0.1 1,487,626 - -2.3 1,487,760 + -1.3 1,487,805 - Shewana3_1276 0.19 +0.1 1,487,877 + Shewana3_1276 0.37 +0.4 1,487,915 + Shewana3_1276 0.46 +0.4 1,487,915 + Shewana3_1276 0.46 -0.5 1,488,010 - Shewana3_1276 0.70 +0.8 1,488,280 + Shewana3_1277 0.12 +0.2 1,488,330 - Shewana3_1277 0.16 +0.7 1,488,330 - Shewana3_1277 0.16 +0.4 1,488,330 - Shewana3_1277 0.16 +1.0 1,488,416 + Shewana3_1277 0.23 +0.1 1,488,441 + Shewana3_1277 0.25 +0.4 1,488,558 - Shewana3_1277 0.35 -1.0 1,488,558 - Shewana3_1277 0.35 +0.3 1,488,588 - Shewana3_1277 0.37 -1.9 1,488,588 - Shewana3_1277 0.37 -0.8 1,488,649 + Shewana3_1277 0.42 -0.5 1,488,668 - Shewana3_1277 0.44 +0.6 1,488,690 + Shewana3_1277 0.46 +0.7 1,488,868 - Shewana3_1277 0.60 +0.4 1,488,961 - Shewana3_1277 0.68 +0.6 1,489,053 + Shewana3_1277 0.75 +0.8 1,489,105 - Shewana3_1277 0.80 -1.2
Or see this region's nucleotide sequence