Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1276

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1275 and Shewana3_1276 are separated by 84 nucleotidesShewana3_1276 and Shewana3_1277 overlap by 4 nucleotides Shewana3_1275: Shewana3_1275 - IclR family transcriptional regulator (RefSeq), at 1,486,964 to 1,487,641 _1275 Shewana3_1276: Shewana3_1276 - hypothetical protein (RefSeq), at 1,487,726 to 1,488,133 _1276 Shewana3_1277: Shewana3_1277 - major facilitator transporter (RefSeq), at 1,488,130 to 1,489,353 _1277 Position (kb) 1487 1488 1489Strain fitness (log2 ratio) -2 -1 0 1at 1486.730 kb on - strandat 1487.036 kb on - strand, within Shewana3_1275at 1487.051 kb on + strand, within Shewana3_1275at 1487.070 kb on - strand, within Shewana3_1275at 1487.187 kb on + strand, within Shewana3_1275at 1487.188 kb on - strand, within Shewana3_1275at 1487.293 kb on - strand, within Shewana3_1275at 1487.463 kb on - strand, within Shewana3_1275at 1487.626 kb on - strandat 1487.760 kb on + strandat 1487.805 kb on - strand, within Shewana3_1276at 1487.877 kb on + strand, within Shewana3_1276at 1487.915 kb on + strand, within Shewana3_1276at 1487.915 kb on + strand, within Shewana3_1276at 1488.010 kb on - strand, within Shewana3_1276at 1488.280 kb on + strand, within Shewana3_1277at 1488.330 kb on - strand, within Shewana3_1277at 1488.330 kb on - strand, within Shewana3_1277at 1488.330 kb on - strand, within Shewana3_1277at 1488.416 kb on + strand, within Shewana3_1277at 1488.441 kb on + strand, within Shewana3_1277at 1488.558 kb on - strand, within Shewana3_1277at 1488.558 kb on - strand, within Shewana3_1277at 1488.588 kb on - strand, within Shewana3_1277at 1488.588 kb on - strand, within Shewana3_1277at 1488.649 kb on + strand, within Shewana3_1277at 1488.668 kb on - strand, within Shewana3_1277at 1488.690 kb on + strand, within Shewana3_1277at 1488.868 kb on - strand, within Shewana3_1277at 1488.961 kb on - strand, within Shewana3_1277at 1489.053 kb on + strand, within Shewana3_1277at 1489.105 kb on - strand, within Shewana3_1277

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,486,730 - +0.3
1,487,036 - Shewana3_1275 0.11 +0.7
1,487,051 + Shewana3_1275 0.13 +0.1
1,487,070 - Shewana3_1275 0.16 -0.3
1,487,187 + Shewana3_1275 0.33 +0.8
1,487,188 - Shewana3_1275 0.33 +0.7
1,487,293 - Shewana3_1275 0.49 +1.0
1,487,463 - Shewana3_1275 0.74 +0.1
1,487,626 - -2.3
1,487,760 + -1.3
1,487,805 - Shewana3_1276 0.19 +0.1
1,487,877 + Shewana3_1276 0.37 +0.4
1,487,915 + Shewana3_1276 0.46 +0.4
1,487,915 + Shewana3_1276 0.46 -0.5
1,488,010 - Shewana3_1276 0.70 +0.8
1,488,280 + Shewana3_1277 0.12 +0.2
1,488,330 - Shewana3_1277 0.16 +0.7
1,488,330 - Shewana3_1277 0.16 +0.4
1,488,330 - Shewana3_1277 0.16 +1.0
1,488,416 + Shewana3_1277 0.23 +0.1
1,488,441 + Shewana3_1277 0.25 +0.4
1,488,558 - Shewana3_1277 0.35 -1.0
1,488,558 - Shewana3_1277 0.35 +0.3
1,488,588 - Shewana3_1277 0.37 -1.9
1,488,588 - Shewana3_1277 0.37 -0.8
1,488,649 + Shewana3_1277 0.42 -0.5
1,488,668 - Shewana3_1277 0.44 +0.6
1,488,690 + Shewana3_1277 0.46 +0.7
1,488,868 - Shewana3_1277 0.60 +0.4
1,488,961 - Shewana3_1277 0.68 +0.6
1,489,053 + Shewana3_1277 0.75 +0.8
1,489,105 - Shewana3_1277 0.80 -1.2

Or see this region's nucleotide sequence