Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1228

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1226 and Shewana3_1227 are separated by 32 nucleotidesShewana3_1227 and Shewana3_1228 overlap by 4 nucleotidesShewana3_1228 and ispG are separated by 42 nucleotides Shewana3_1226: Shewana3_1226 - hypothetical protein (RefSeq), at 1,429,449 to 1,430,570 _1226 Shewana3_1227: Shewana3_1227 - type IV pilus biogenesis/stability protein PilW (RefSeq), at 1,430,603 to 1,431,391 _1227 Shewana3_1228: Shewana3_1228 - hypothetical protein (RefSeq), at 1,431,388 to 1,432,515 _1228 Shewana3_1229: ispG - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (RefSeq), at 1,432,558 to 1,433,673 ispG Position (kb) 1431 1432 1433Strain fitness (log2 ratio) -2 -1 0 1at 1430.821 kb on - strand, within Shewana3_1227at 1430.925 kb on - strand, within Shewana3_1227at 1431.499 kb on + strandat 1431.941 kb on + strand, within Shewana3_1228at 1432.157 kb on + strand, within Shewana3_1228at 1432.192 kb on + strand, within Shewana3_1228at 1432.192 kb on + strand, within Shewana3_1228at 1432.224 kb on + strand, within Shewana3_1228at 1432.226 kb on + strand, within Shewana3_1228at 1432.243 kb on + strand, within Shewana3_1228at 1432.248 kb on + strand, within Shewana3_1228at 1432.290 kb on + strand, within Shewana3_1228at 1432.349 kb on + strand, within Shewana3_1228at 1432.377 kb on + strand, within Shewana3_1228

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,430,821 - Shewana3_1227 0.28 +0.6
1,430,925 - Shewana3_1227 0.41 -0.5
1,431,499 + -2.4
1,431,941 + Shewana3_1228 0.49 +0.9
1,432,157 + Shewana3_1228 0.68 -1.2
1,432,192 + Shewana3_1228 0.71 +1.5
1,432,192 + Shewana3_1228 0.71 +0.8
1,432,224 + Shewana3_1228 0.74 +0.2
1,432,226 + Shewana3_1228 0.74 +1.1
1,432,243 + Shewana3_1228 0.76 +0.1
1,432,248 + Shewana3_1228 0.76 +1.1
1,432,290 + Shewana3_1228 0.80 -0.0
1,432,349 + Shewana3_1228 0.85 +0.5
1,432,377 + Shewana3_1228 0.88 -0.1

Or see this region's nucleotide sequence