Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1202

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1200 and Shewana3_1201 are separated by 68 nucleotidesShewana3_1201 and Shewana3_1202 are separated by 149 nucleotidesShewana3_1202 and Shewana3_1203 are separated by 179 nucleotides Shewana3_1200: Shewana3_1200 - hypothetical protein (RefSeq), at 1,406,415 to 1,406,978 _1200 Shewana3_1201: Shewana3_1201 - translation initiation factor Sui1 (RefSeq), at 1,407,047 to 1,407,376 _1201 Shewana3_1202: Shewana3_1202 - hypothetical protein (RefSeq), at 1,407,526 to 1,407,840 _1202 Shewana3_1203: Shewana3_1203 - hypothetical protein (RefSeq), at 1,408,020 to 1,408,580 _1203 Position (kb) 1407 1408Strain fitness (log2 ratio) -2 -1 0 1at 1406.545 kb on - strand, within Shewana3_1200at 1406.563 kb on - strand, within Shewana3_1200at 1406.660 kb on - strand, within Shewana3_1200at 1406.726 kb on - strand, within Shewana3_1200at 1406.997 kb on - strandat 1407.195 kb on - strand, within Shewana3_1201at 1407.244 kb on - strand, within Shewana3_1201at 1407.244 kb on - strand, within Shewana3_1201at 1407.501 kb on + strandat 1407.678 kb on - strand, within Shewana3_1202at 1407.751 kb on - strand, within Shewana3_1202at 1407.758 kb on - strand, within Shewana3_1202at 1407.916 kb on - strandat 1407.939 kb on + strandat 1408.118 kb on + strand, within Shewana3_1203at 1408.118 kb on + strand, within Shewana3_1203at 1408.125 kb on + strand, within Shewana3_1203at 1408.126 kb on - strand, within Shewana3_1203at 1408.126 kb on - strand, within Shewana3_1203at 1408.229 kb on + strand, within Shewana3_1203at 1408.230 kb on + strand, within Shewana3_1203at 1408.353 kb on + strand, within Shewana3_1203at 1408.353 kb on + strand, within Shewana3_1203at 1408.353 kb on + strand, within Shewana3_1203at 1408.361 kb on - strand, within Shewana3_1203at 1408.361 kb on - strand, within Shewana3_1203at 1408.786 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,406,545 - Shewana3_1200 0.23 +0.6
1,406,563 - Shewana3_1200 0.26 -1.5
1,406,660 - Shewana3_1200 0.43 +0.7
1,406,726 - Shewana3_1200 0.55 -2.1
1,406,997 - +0.5
1,407,195 - Shewana3_1201 0.45 -1.6
1,407,244 - Shewana3_1201 0.60 +0.1
1,407,244 - Shewana3_1201 0.60 +0.2
1,407,501 + +0.5
1,407,678 - Shewana3_1202 0.48 +0.6
1,407,751 - Shewana3_1202 0.71 +0.1
1,407,758 - Shewana3_1202 0.74 +1.3
1,407,916 - +0.3
1,407,939 + +0.1
1,408,118 + Shewana3_1203 0.17 +0.4
1,408,118 + Shewana3_1203 0.17 +0.7
1,408,125 + Shewana3_1203 0.19 -0.3
1,408,126 - Shewana3_1203 0.19 +0.8
1,408,126 - Shewana3_1203 0.19 -1.3
1,408,229 + Shewana3_1203 0.37 -2.5
1,408,230 + Shewana3_1203 0.37 -1.1
1,408,353 + Shewana3_1203 0.59 +0.5
1,408,353 + Shewana3_1203 0.59 -0.6
1,408,353 + Shewana3_1203 0.59 -1.3
1,408,361 - Shewana3_1203 0.61 +0.4
1,408,361 - Shewana3_1203 0.61 +0.4
1,408,786 + +0.9

Or see this region's nucleotide sequence