Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0972

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0971 and Shewana3_0972 are separated by 22 nucleotidesShewana3_0972 and Shewana3_0973 are separated by 680 nucleotides Shewana3_0971: Shewana3_0971 - magnesium transporter (RefSeq), at 1,141,073 to 1,142,446 _0971 Shewana3_0972: Shewana3_0972 - hypothetical protein (RefSeq), at 1,142,469 to 1,143,170 _0972 Shewana3_0973: Shewana3_0973 - endonuclease/exonuclease/phosphatase (RefSeq), at 1,143,851 to 1,144,984 _0973 Position (kb) 1142 1143 1144Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1141.469 kb on + strand, within Shewana3_0971at 1141.496 kb on + strand, within Shewana3_0971at 1141.584 kb on + strand, within Shewana3_0971at 1141.594 kb on + strand, within Shewana3_0971at 1141.597 kb on - strand, within Shewana3_0971at 1141.602 kb on - strand, within Shewana3_0971at 1142.012 kb on - strand, within Shewana3_0971at 1142.081 kb on - strand, within Shewana3_0971at 1142.113 kb on + strand, within Shewana3_0971at 1142.113 kb on + strand, within Shewana3_0971at 1142.113 kb on + strand, within Shewana3_0971at 1142.138 kb on - strand, within Shewana3_0971at 1142.290 kb on + strand, within Shewana3_0971at 1143.021 kb on - strand, within Shewana3_0972at 1143.021 kb on - strand, within Shewana3_0972at 1143.122 kb on - strandat 1143.365 kb on - strandat 1144.072 kb on - strand, within Shewana3_0973at 1144.072 kb on - strand, within Shewana3_0973

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,141,469 + Shewana3_0971 0.29 -4.3
1,141,496 + Shewana3_0971 0.31 -4.4
1,141,584 + Shewana3_0971 0.37 -4.5
1,141,594 + Shewana3_0971 0.38 -4.3
1,141,597 - Shewana3_0971 0.38 -3.2
1,141,602 - Shewana3_0971 0.39 -2.7
1,142,012 - Shewana3_0971 0.68 -4.9
1,142,081 - Shewana3_0971 0.73 -4.8
1,142,113 + Shewana3_0971 0.76 -4.4
1,142,113 + Shewana3_0971 0.76 -1.5
1,142,113 + Shewana3_0971 0.76 -3.2
1,142,138 - Shewana3_0971 0.78 -5.9
1,142,290 + Shewana3_0971 0.89 -4.7
1,143,021 - Shewana3_0972 0.79 -4.4
1,143,021 - Shewana3_0972 0.79 -4.4
1,143,122 - -3.8
1,143,365 - -4.9
1,144,072 - Shewana3_0973 0.19 -2.1
1,144,072 - Shewana3_0973 0.19 -1.3

Or see this region's nucleotide sequence