Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0946

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0944 and Shewana3_0945 are separated by 11 nucleotidesShewana3_0945 and Shewana3_0946 are separated by 238 nucleotidesShewana3_0946 and Shewana3_0947 are separated by 9 nucleotidesShewana3_0947 and Shewana3_0948 are separated by 299 nucleotides Shewana3_0944: Shewana3_0944 - ApbE family lipoprotein (RefSeq), at 1,105,032 to 1,106,156 _0944 Shewana3_0945: Shewana3_0945 - hypothetical protein (RefSeq), at 1,106,168 to 1,106,392 _0945 Shewana3_0946: Shewana3_0946 - bacterioferritin (RefSeq), at 1,106,631 to 1,107,104 _0946 Shewana3_0947: Shewana3_0947 - bacterioferritin (RefSeq), at 1,107,114 to 1,107,581 _0947 Shewana3_0948: Shewana3_0948 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,107,881 to 1,109,884 _0948 Position (kb) 1106 1107 1108Strain fitness (log2 ratio) -3 -2 -1 0 1at 1106.135 kb on + strandat 1106.160 kb on + strandat 1106.884 kb on - strand, within Shewana3_0946at 1106.941 kb on + strand, within Shewana3_0946at 1106.941 kb on + strand, within Shewana3_0946at 1106.941 kb on + strand, within Shewana3_0946at 1106.941 kb on + strand, within Shewana3_0946at 1106.949 kb on - strand, within Shewana3_0946at 1107.180 kb on + strand, within Shewana3_0947at 1107.331 kb on + strand, within Shewana3_0947at 1107.402 kb on - strand, within Shewana3_0947at 1107.536 kb on + strandat 1107.584 kb on + strandat 1107.584 kb on - strandat 1107.668 kb on - strandat 1107.996 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,106,135 + -1.1
1,106,160 + -3.5
1,106,884 - Shewana3_0946 0.53 -1.0
1,106,941 + Shewana3_0946 0.65 +0.7
1,106,941 + Shewana3_0946 0.65 -1.8
1,106,941 + Shewana3_0946 0.65 +0.3
1,106,941 + Shewana3_0946 0.65 -0.9
1,106,949 - Shewana3_0946 0.67 -1.3
1,107,180 + Shewana3_0947 0.14 +0.7
1,107,331 + Shewana3_0947 0.46 +0.4
1,107,402 - Shewana3_0947 0.62 -1.7
1,107,536 + +0.0
1,107,584 + +0.1
1,107,584 - -0.2
1,107,668 - -3.3
1,107,996 + -1.5

Or see this region's nucleotide sequence