Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0893 and Shewana3_0894 are separated by 237 nucleotides Shewana3_0894 and Shewana3_0895 are separated by 106 nucleotides
Shewana3_0893: Shewana3_0893 - hypothetical protein (RefSeq), at 1,040,010 to 1,040,960
_0893
Shewana3_0894: Shewana3_0894 - diguanylate cyclase with PAS/PAC and GAF sensors (RefSeq), at 1,041,198 to 1,042,646
_0894
Shewana3_0895: Shewana3_0895 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,042,753 to 1,044,645
_0895
Position (kb)
1041
1042
1043 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1040.207 kb on + strand, within Shewana3_0893 at 1040.429 kb on - strand, within Shewana3_0893 at 1040.526 kb on + strand, within Shewana3_0893 at 1040.749 kb on - strand, within Shewana3_0893 at 1041.110 kb on + strand at 1041.110 kb on + strand at 1041.110 kb on + strand at 1041.110 kb on + strand at 1041.110 kb on - strand at 1041.118 kb on - strand at 1041.118 kb on - strand at 1041.118 kb on - strand at 1041.158 kb on + strand at 1041.178 kb on - strand at 1041.614 kb on + strand, within Shewana3_0894 at 1041.672 kb on + strand, within Shewana3_0894 at 1042.007 kb on + strand, within Shewana3_0894 at 1042.015 kb on - strand, within Shewana3_0894 at 1042.027 kb on - strand, within Shewana3_0894 at 1042.446 kb on - strand, within Shewana3_0894 at 1042.485 kb on - strand, within Shewana3_0894 at 1042.915 kb on - strand at 1043.504 kb on + strand, within Shewana3_0895 at 1043.542 kb on - strand, within Shewana3_0895
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 1,040,207 + Shewana3_0893 0.21 +0.3 1,040,429 - Shewana3_0893 0.44 +0.9 1,040,526 + Shewana3_0893 0.54 +0.6 1,040,749 - Shewana3_0893 0.78 -1.8 1,041,110 + -2.3 1,041,110 + +1.0 1,041,110 + -0.0 1,041,110 + -1.6 1,041,110 - +0.3 1,041,118 - +0.3 1,041,118 - -0.1 1,041,118 - +0.8 1,041,158 + -1.6 1,041,178 - -4.5 1,041,614 + Shewana3_0894 0.29 +0.6 1,041,672 + Shewana3_0894 0.33 +0.4 1,042,007 + Shewana3_0894 0.56 +0.2 1,042,015 - Shewana3_0894 0.56 +0.4 1,042,027 - Shewana3_0894 0.57 +0.5 1,042,446 - Shewana3_0894 0.86 -0.2 1,042,485 - Shewana3_0894 0.89 +0.4 1,042,915 - +0.4 1,043,504 + Shewana3_0895 0.40 +1.3 1,043,542 - Shewana3_0895 0.42 +0.4
Or see this region's nucleotide sequence