Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0873 and Shewana3_0874 are separated by 123 nucleotides Shewana3_0874 and Shewana3_0875 are separated by 253 nucleotides
Shewana3_0873: Shewana3_0873 - putative lipoprotein (RefSeq), at 1,018,421 to 1,019,428
_0873
Shewana3_0874: Shewana3_0874 - DSBA oxidoreductase (RefSeq), at 1,019,552 to 1,020,304
_0874
Shewana3_0875: Shewana3_0875 - formate dehydrogenase (RefSeq), at 1,020,558 to 1,021,202
_0875
Position (kb)
1019
1020
1021 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1018.702 kb on + strand, within Shewana3_0873 at 1019.004 kb on + strand, within Shewana3_0873 at 1019.012 kb on - strand, within Shewana3_0873 at 1019.396 kb on + strand at 1019.429 kb on + strand at 1019.872 kb on + strand, within Shewana3_0874 at 1020.039 kb on + strand, within Shewana3_0874 at 1020.093 kb on + strand, within Shewana3_0874 at 1020.100 kb on + strand, within Shewana3_0874 at 1020.186 kb on - strand, within Shewana3_0874 at 1020.295 kb on - strand at 1020.295 kb on - strand at 1020.310 kb on + strand at 1020.437 kb on + strand at 1020.450 kb on - strand at 1020.531 kb on + strand at 1020.532 kb on - strand at 1020.586 kb on + strand at 1020.685 kb on - strand, within Shewana3_0875 at 1020.695 kb on + strand, within Shewana3_0875 at 1020.762 kb on + strand, within Shewana3_0875 at 1021.088 kb on + strand, within Shewana3_0875 at 1021.125 kb on - strand, within Shewana3_0875 at 1021.130 kb on - strand, within Shewana3_0875 at 1021.154 kb on - strand at 1021.169 kb on + strand at 1021.169 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 1,018,702 + Shewana3_0873 0.28 +0.5 1,019,004 + Shewana3_0873 0.58 +0.6 1,019,012 - Shewana3_0873 0.59 +0.9 1,019,396 + -0.0 1,019,429 + +0.5 1,019,872 + Shewana3_0874 0.42 +0.3 1,020,039 + Shewana3_0874 0.65 -1.4 1,020,093 + Shewana3_0874 0.72 +0.6 1,020,100 + Shewana3_0874 0.73 -1.7 1,020,186 - Shewana3_0874 0.84 +0.1 1,020,295 - -0.0 1,020,295 - -1.3 1,020,310 + +0.8 1,020,437 + +0.6 1,020,450 - +0.3 1,020,531 + -1.2 1,020,532 - -1.8 1,020,586 + -1.8 1,020,685 - Shewana3_0875 0.20 -1.2 1,020,695 + Shewana3_0875 0.21 -1.3 1,020,762 + Shewana3_0875 0.32 +0.7 1,021,088 + Shewana3_0875 0.82 -3.9 1,021,125 - Shewana3_0875 0.88 +0.1 1,021,130 - Shewana3_0875 0.89 -1.6 1,021,154 - -1.4 1,021,169 + +0.6 1,021,169 + -1.7
Or see this region's nucleotide sequence