Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0873

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0871 and Shewana3_0872 are separated by 41 nucleotidesShewana3_0872 and Shewana3_0873 are separated by 264 nucleotidesShewana3_0873 and Shewana3_0874 are separated by 123 nucleotides Shewana3_0871: Shewana3_0871 - protoporphyrinogen oxidase (RefSeq), at 1,017,066 to 1,017,587 _0871 Shewana3_0872: Shewana3_0872 - hypothetical protein (RefSeq), at 1,017,629 to 1,018,156 _0872 Shewana3_0873: Shewana3_0873 - putative lipoprotein (RefSeq), at 1,018,421 to 1,019,428 _0873 Shewana3_0874: Shewana3_0874 - DSBA oxidoreductase (RefSeq), at 1,019,552 to 1,020,304 _0874 Position (kb) 1018 1019 1020Strain fitness (log2 ratio) -3 -2 -1 0 1at 1017.714 kb on + strand, within Shewana3_0872at 1017.746 kb on - strand, within Shewana3_0872at 1017.746 kb on - strand, within Shewana3_0872at 1017.799 kb on - strand, within Shewana3_0872at 1017.916 kb on + strand, within Shewana3_0872at 1017.916 kb on + strand, within Shewana3_0872at 1017.955 kb on + strand, within Shewana3_0872at 1017.968 kb on - strand, within Shewana3_0872at 1018.001 kb on + strand, within Shewana3_0872at 1018.290 kb on + strandat 1018.298 kb on - strandat 1018.335 kb on + strandat 1018.490 kb on - strandat 1018.702 kb on + strand, within Shewana3_0873at 1019.004 kb on + strand, within Shewana3_0873at 1019.012 kb on - strand, within Shewana3_0873at 1019.396 kb on + strandat 1019.429 kb on + strandat 1019.872 kb on + strand, within Shewana3_0874at 1020.039 kb on + strand, within Shewana3_0874at 1020.093 kb on + strand, within Shewana3_0874at 1020.100 kb on + strand, within Shewana3_0874at 1020.186 kb on - strand, within Shewana3_0874at 1020.295 kb on - strandat 1020.295 kb on - strandat 1020.310 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,017,714 + Shewana3_0872 0.16 -1.4
1,017,746 - Shewana3_0872 0.22 +0.9
1,017,746 - Shewana3_0872 0.22 +0.9
1,017,799 - Shewana3_0872 0.32 +0.7
1,017,916 + Shewana3_0872 0.54 +0.6
1,017,916 + Shewana3_0872 0.54 -2.4
1,017,955 + Shewana3_0872 0.62 +0.8
1,017,968 - Shewana3_0872 0.64 -1.3
1,018,001 + Shewana3_0872 0.70 -3.1
1,018,290 + +0.7
1,018,298 - +0.5
1,018,335 + -1.5
1,018,490 - +0.8
1,018,702 + Shewana3_0873 0.28 +0.5
1,019,004 + Shewana3_0873 0.58 +0.6
1,019,012 - Shewana3_0873 0.59 +0.9
1,019,396 + -0.0
1,019,429 + +0.5
1,019,872 + Shewana3_0874 0.42 +0.3
1,020,039 + Shewana3_0874 0.65 -1.4
1,020,093 + Shewana3_0874 0.72 +0.6
1,020,100 + Shewana3_0874 0.73 -1.7
1,020,186 - Shewana3_0874 0.84 +0.1
1,020,295 - -0.0
1,020,295 - -1.3
1,020,310 + +0.8

Or see this region's nucleotide sequence