Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0823 and Shewana3_0824 are separated by 53 nucleotides Shewana3_0824 and Shewana3_0825 are separated by 133 nucleotides Shewana3_0825 and Shewana3_0826 are separated by 107 nucleotides
Shewana3_0823: Shewana3_0823 - adenylate cyclase (RefSeq), at 954,034 to 955,545
_0823
Shewana3_0824: Shewana3_0824 - Ion transport 2 domain-containing protein (RefSeq), at 955,599 to 956,423
_0824
Shewana3_0825: Shewana3_0825 - hypothetical protein (RefSeq), at 956,557 to 956,886
_0825
Shewana3_0826: Shewana3_0826 - hypothetical protein (RefSeq), at 956,994 to 957,647
_0826
Position (kb) 955
956
957 Strain fitness (log2 ratio) -2
-1
0
1 at 954.603 kb on - strand, within Shewana3_0823 at 954.608 kb on - strand, within Shewana3_0823 at 954.653 kb on + strand, within Shewana3_0823 at 954.653 kb on + strand, within Shewana3_0823 at 954.661 kb on - strand, within Shewana3_0823 at 954.701 kb on + strand, within Shewana3_0823 at 954.739 kb on + strand, within Shewana3_0823 at 955.021 kb on + strand, within Shewana3_0823 at 955.094 kb on + strand, within Shewana3_0823 at 955.157 kb on + strand, within Shewana3_0823 at 955.222 kb on - strand, within Shewana3_0823 at 955.254 kb on + strand, within Shewana3_0823 at 955.296 kb on - strand, within Shewana3_0823 at 955.329 kb on - strand, within Shewana3_0823 at 955.432 kb on + strand at 955.463 kb on + strand at 955.463 kb on + strand at 955.471 kb on - strand at 955.477 kb on + strand at 955.746 kb on + strand, within Shewana3_0824 at 956.009 kb on - strand, within Shewana3_0824 at 956.024 kb on + strand, within Shewana3_0824 at 956.134 kb on - strand, within Shewana3_0824 at 956.306 kb on + strand, within Shewana3_0824 at 956.306 kb on + strand, within Shewana3_0824 at 956.402 kb on + strand at 956.586 kb on - strand at 956.703 kb on - strand, within Shewana3_0825 at 956.861 kb on + strand at 957.042 kb on + strand at 957.167 kb on + strand, within Shewana3_0826 at 957.217 kb on - strand, within Shewana3_0826 at 957.217 kb on - strand, within Shewana3_0826 at 957.217 kb on - strand, within Shewana3_0826
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 954,603 - Shewana3_0823 0.38 +1.2 954,608 - Shewana3_0823 0.38 +1.4 954,653 + Shewana3_0823 0.41 -1.8 954,653 + Shewana3_0823 0.41 -0.9 954,661 - Shewana3_0823 0.41 +1.3 954,701 + Shewana3_0823 0.44 +1.3 954,739 + Shewana3_0823 0.47 -0.3 955,021 + Shewana3_0823 0.65 -0.4 955,094 + Shewana3_0823 0.70 +1.0 955,157 + Shewana3_0823 0.74 -1.1 955,222 - Shewana3_0823 0.79 -1.2 955,254 + Shewana3_0823 0.81 +0.5 955,296 - Shewana3_0823 0.83 -1.0 955,329 - Shewana3_0823 0.86 -1.3 955,432 + +1.0 955,463 + +0.6 955,463 + -0.3 955,471 - -1.8 955,477 + -2.0 955,746 + Shewana3_0824 0.18 -0.1 956,009 - Shewana3_0824 0.50 +0.6 956,024 + Shewana3_0824 0.52 -1.1 956,134 - Shewana3_0824 0.65 +1.1 956,306 + Shewana3_0824 0.86 +1.3 956,306 + Shewana3_0824 0.86 +0.6 956,402 + -0.8 956,586 - -0.2 956,703 - Shewana3_0825 0.44 -1.4 956,861 + -1.3 957,042 + -2.6 957,167 + Shewana3_0826 0.26 +0.4 957,217 - Shewana3_0826 0.34 +0.3 957,217 - Shewana3_0826 0.34 -1.5 957,217 - Shewana3_0826 0.34 +0.6
Or see this region's nucleotide sequence