Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0811 and Shewana3_0812 are separated by 247 nucleotides Shewana3_0812 and Shewana3_0813 overlap by 4 nucleotides
Shewana3_0811: Shewana3_0811 - hypothetical protein (RefSeq), at 937,366 to 938,412
_0811
Shewana3_0812: Shewana3_0812 - cysteine/glutathione ABC transporter membrane/ATP-binding component (RefSeq), at 938,660 to 940,621
_0812
Shewana3_0813: Shewana3_0813 - cysteine/glutathione ABC transporter membrane/ATP-binding component (RefSeq), at 940,618 to 942,369
_0813
Position (kb) 938
939
940
941 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 937.666 kb on + strand, within Shewana3_0811 at 937.692 kb on - strand, within Shewana3_0811 at 937.703 kb on - strand, within Shewana3_0811 at 937.752 kb on + strand, within Shewana3_0811 at 937.756 kb on - strand, within Shewana3_0811 at 937.911 kb on + strand, within Shewana3_0811 at 938.054 kb on - strand, within Shewana3_0811 at 938.180 kb on + strand, within Shewana3_0811 at 938.363 kb on + strand at 938.371 kb on - strand at 938.432 kb on - strand at 938.515 kb on + strand at 938.526 kb on + strand at 938.874 kb on - strand, within Shewana3_0812 at 939.188 kb on + strand, within Shewana3_0812 at 939.341 kb on - strand, within Shewana3_0812 at 939.359 kb on - strand, within Shewana3_0812 at 939.650 kb on - strand, within Shewana3_0812 at 939.669 kb on - strand, within Shewana3_0812 at 940.034 kb on - strand, within Shewana3_0812 at 940.327 kb on - strand, within Shewana3_0812 at 940.396 kb on + strand, within Shewana3_0812 at 940.450 kb on + strand at 940.458 kb on - strand at 940.647 kb on - strand at 940.669 kb on - strand at 940.960 kb on + strand, within Shewana3_0813 at 940.978 kb on - strand, within Shewana3_0813 at 941.094 kb on + strand, within Shewana3_0813 at 941.297 kb on + strand, within Shewana3_0813 at 941.297 kb on + strand, within Shewana3_0813 at 941.305 kb on - strand, within Shewana3_0813 at 941.374 kb on - strand, within Shewana3_0813 at 941.482 kb on + strand, within Shewana3_0813
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 937,666 + Shewana3_0811 0.29 -1.3 937,692 - Shewana3_0811 0.31 -1.0 937,703 - Shewana3_0811 0.32 -2.4 937,752 + Shewana3_0811 0.37 -0.5 937,756 - Shewana3_0811 0.37 -5.4 937,911 + Shewana3_0811 0.52 -4.2 938,054 - Shewana3_0811 0.66 +1.2 938,180 + Shewana3_0811 0.78 +0.4 938,363 + +0.6 938,371 - +1.7 938,432 - +0.7 938,515 + -0.9 938,526 + +0.5 938,874 - Shewana3_0812 0.11 +0.9 939,188 + Shewana3_0812 0.27 +1.5 939,341 - Shewana3_0812 0.35 +1.0 939,359 - Shewana3_0812 0.36 +1.4 939,650 - Shewana3_0812 0.50 +1.0 939,669 - Shewana3_0812 0.51 +0.9 940,034 - Shewana3_0812 0.70 +1.0 940,327 - Shewana3_0812 0.85 +0.6 940,396 + Shewana3_0812 0.88 -1.1 940,450 + +0.9 940,458 - -0.8 940,647 - -1.1 940,669 - -1.1 940,960 + Shewana3_0813 0.20 -1.1 940,978 - Shewana3_0813 0.21 +0.4 941,094 + Shewana3_0813 0.27 +0.4 941,297 + Shewana3_0813 0.39 -0.5 941,297 + Shewana3_0813 0.39 +2.2 941,305 - Shewana3_0813 0.39 -1.4 941,374 - Shewana3_0813 0.43 +1.4 941,482 + Shewana3_0813 0.49 +1.2
Or see this region's nucleotide sequence