Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0811

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0810 and Shewana3_0811 are separated by 405 nucleotidesShewana3_0811 and Shewana3_0812 are separated by 247 nucleotides Shewana3_0810: Shewana3_0810 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 935,224 to 936,960 _0810 Shewana3_0811: Shewana3_0811 - hypothetical protein (RefSeq), at 937,366 to 938,412 _0811 Shewana3_0812: Shewana3_0812 - cysteine/glutathione ABC transporter membrane/ATP-binding component (RefSeq), at 938,660 to 940,621 _0812 Position (kb) 937 938 939Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 936.546 kb on + strand, within Shewana3_0810at 936.554 kb on - strand, within Shewana3_0810at 936.593 kb on - strand, within Shewana3_0810at 936.721 kb on + strand, within Shewana3_0810at 936.792 kb on + strandat 936.892 kb on - strandat 936.903 kb on - strandat 936.910 kb on + strandat 936.935 kb on + strandat 936.993 kb on - strandat 937.330 kb on - strandat 937.348 kb on + strandat 937.378 kb on - strandat 937.558 kb on - strand, within Shewana3_0811at 937.666 kb on + strand, within Shewana3_0811at 937.692 kb on - strand, within Shewana3_0811at 937.703 kb on - strand, within Shewana3_0811at 937.752 kb on + strand, within Shewana3_0811at 937.756 kb on - strand, within Shewana3_0811at 937.911 kb on + strand, within Shewana3_0811at 938.054 kb on - strand, within Shewana3_0811at 938.180 kb on + strand, within Shewana3_0811at 938.363 kb on + strandat 938.371 kb on - strandat 938.432 kb on - strandat 938.515 kb on + strandat 938.526 kb on + strandat 938.874 kb on - strand, within Shewana3_0812at 939.188 kb on + strand, within Shewana3_0812at 939.341 kb on - strand, within Shewana3_0812at 939.359 kb on - strand, within Shewana3_0812

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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936,546 + Shewana3_0810 0.76 +1.2
936,554 - Shewana3_0810 0.77 -1.4
936,593 - Shewana3_0810 0.79 +0.4
936,721 + Shewana3_0810 0.86 +0.1
936,792 + +0.4
936,892 - +0.9
936,903 - +0.1
936,910 + +0.7
936,935 + +0.2
936,993 - -1.9
937,330 - +0.4
937,348 + -2.6
937,378 - -2.3
937,558 - Shewana3_0811 0.18 +0.7
937,666 + Shewana3_0811 0.29 -1.3
937,692 - Shewana3_0811 0.31 -1.0
937,703 - Shewana3_0811 0.32 -2.4
937,752 + Shewana3_0811 0.37 -0.5
937,756 - Shewana3_0811 0.37 -5.4
937,911 + Shewana3_0811 0.52 -4.2
938,054 - Shewana3_0811 0.66 +1.2
938,180 + Shewana3_0811 0.78 +0.4
938,363 + +0.6
938,371 - +1.7
938,432 - +0.7
938,515 + -0.9
938,526 + +0.5
938,874 - Shewana3_0812 0.11 +0.9
939,188 + Shewana3_0812 0.27 +1.5
939,341 - Shewana3_0812 0.35 +1.0
939,359 - Shewana3_0812 0.36 +1.4

Or see this region's nucleotide sequence