Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0777 and Shewana3_0778 are separated by 54 nucleotides Shewana3_0778 and Shewana3_0779 overlap by 4 nucleotides Shewana3_0779 and Shewana3_0780 are separated by 295 nucleotides
Shewana3_0777: Shewana3_0777 - EAL domain-containing protein (RefSeq), at 898,940 to 900,499
_0777
Shewana3_0778: Shewana3_0778 - ammonium transporter (RefSeq), at 900,554 to 901,954
_0778
Shewana3_0779: Shewana3_0779 - nitrogen regulatory protein P-II (RefSeq), at 901,951 to 902,289
_0779
Shewana3_0780: Shewana3_0780 - 2-dehydropantoate 2-reductase (RefSeq), at 902,585 to 903,568
_0780
Position (kb)
900
901
902 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 899.813 kb on + strand, within Shewana3_0777 at 899.821 kb on - strand, within Shewana3_0777 at 899.836 kb on + strand, within Shewana3_0777 at 899.836 kb on + strand, within Shewana3_0777 at 899.844 kb on - strand, within Shewana3_0777 at 899.844 kb on - strand, within Shewana3_0777 at 899.882 kb on + strand, within Shewana3_0777 at 899.939 kb on + strand, within Shewana3_0777 at 900.205 kb on + strand, within Shewana3_0777 at 900.213 kb on - strand, within Shewana3_0777 at 900.236 kb on + strand, within Shewana3_0777 at 900.253 kb on + strand, within Shewana3_0777 at 900.317 kb on - strand, within Shewana3_0777 at 900.330 kb on + strand, within Shewana3_0777 at 900.480 kb on + strand at 900.499 kb on + strand at 900.551 kb on + strand at 900.560 kb on + strand at 900.703 kb on + strand, within Shewana3_0778 at 900.742 kb on + strand, within Shewana3_0778 at 900.954 kb on + strand, within Shewana3_0778 at 900.986 kb on - strand, within Shewana3_0778 at 900.993 kb on - strand, within Shewana3_0778 at 901.228 kb on - strand, within Shewana3_0778 at 901.291 kb on + strand, within Shewana3_0778 at 901.294 kb on - strand, within Shewana3_0778 at 901.495 kb on - strand, within Shewana3_0778 at 901.613 kb on + strand, within Shewana3_0778 at 901.613 kb on + strand, within Shewana3_0778 at 901.618 kb on + strand, within Shewana3_0778 at 901.618 kb on + strand, within Shewana3_0778 at 901.700 kb on - strand, within Shewana3_0778 at 901.715 kb on - strand, within Shewana3_0778 at 901.798 kb on - strand, within Shewana3_0778 at 902.155 kb on - strand, within Shewana3_0779 at 902.186 kb on - strand, within Shewana3_0779 at 902.712 kb on + strand, within Shewana3_0780 at 902.730 kb on - strand, within Shewana3_0780 at 902.788 kb on + strand, within Shewana3_0780 at 902.912 kb on - strand, within Shewana3_0780
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 899,813 + Shewana3_0777 0.56 -1.3 899,821 - Shewana3_0777 0.56 +1.1 899,836 + Shewana3_0777 0.57 -1.7 899,836 + Shewana3_0777 0.57 +0.4 899,844 - Shewana3_0777 0.58 +0.4 899,844 - Shewana3_0777 0.58 -1.8 899,882 + Shewana3_0777 0.60 +0.3 899,939 + Shewana3_0777 0.64 -0.2 900,205 + Shewana3_0777 0.81 +1.6 900,213 - Shewana3_0777 0.82 -0.1 900,236 + Shewana3_0777 0.83 -1.3 900,253 + Shewana3_0777 0.84 +0.5 900,317 - Shewana3_0777 0.88 -0.9 900,330 + Shewana3_0777 0.89 +0.5 900,480 + -1.3 900,499 + -1.7 900,551 + -1.4 900,560 + -1.2 900,703 + Shewana3_0778 0.11 -2.6 900,742 + Shewana3_0778 0.13 +0.5 900,954 + Shewana3_0778 0.29 +0.4 900,986 - Shewana3_0778 0.31 +0.8 900,993 - Shewana3_0778 0.31 -1.4 901,228 - Shewana3_0778 0.48 +0.2 901,291 + Shewana3_0778 0.53 -3.4 901,294 - Shewana3_0778 0.53 +0.5 901,495 - Shewana3_0778 0.67 +1.1 901,613 + Shewana3_0778 0.76 +0.0 901,613 + Shewana3_0778 0.76 +0.6 901,618 + Shewana3_0778 0.76 +0.5 901,618 + Shewana3_0778 0.76 +0.5 901,700 - Shewana3_0778 0.82 -0.3 901,715 - Shewana3_0778 0.83 +1.0 901,798 - Shewana3_0778 0.89 -0.1 902,155 - Shewana3_0779 0.60 +0.6 902,186 - Shewana3_0779 0.69 +0.5 902,712 + Shewana3_0780 0.13 -0.1 902,730 - Shewana3_0780 0.15 -1.1 902,788 + Shewana3_0780 0.21 -1.9 902,912 - Shewana3_0780 0.33 -3.4
Or see this region's nucleotide sequence