Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0778

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0777 and Shewana3_0778 are separated by 54 nucleotidesShewana3_0778 and Shewana3_0779 overlap by 4 nucleotidesShewana3_0779 and Shewana3_0780 are separated by 295 nucleotides Shewana3_0777: Shewana3_0777 - EAL domain-containing protein (RefSeq), at 898,940 to 900,499 _0777 Shewana3_0778: Shewana3_0778 - ammonium transporter (RefSeq), at 900,554 to 901,954 _0778 Shewana3_0779: Shewana3_0779 - nitrogen regulatory protein P-II (RefSeq), at 901,951 to 902,289 _0779 Shewana3_0780: Shewana3_0780 - 2-dehydropantoate 2-reductase (RefSeq), at 902,585 to 903,568 _0780 Position (kb) 900 901 902Strain fitness (log2 ratio) -3 -2 -1 0 1at 899.813 kb on + strand, within Shewana3_0777at 899.821 kb on - strand, within Shewana3_0777at 899.836 kb on + strand, within Shewana3_0777at 899.836 kb on + strand, within Shewana3_0777at 899.844 kb on - strand, within Shewana3_0777at 899.844 kb on - strand, within Shewana3_0777at 899.882 kb on + strand, within Shewana3_0777at 899.939 kb on + strand, within Shewana3_0777at 900.205 kb on + strand, within Shewana3_0777at 900.213 kb on - strand, within Shewana3_0777at 900.236 kb on + strand, within Shewana3_0777at 900.253 kb on + strand, within Shewana3_0777at 900.317 kb on - strand, within Shewana3_0777at 900.330 kb on + strand, within Shewana3_0777at 900.480 kb on + strandat 900.499 kb on + strandat 900.551 kb on + strandat 900.560 kb on + strandat 900.703 kb on + strand, within Shewana3_0778at 900.742 kb on + strand, within Shewana3_0778at 900.954 kb on + strand, within Shewana3_0778at 900.986 kb on - strand, within Shewana3_0778at 900.993 kb on - strand, within Shewana3_0778at 901.228 kb on - strand, within Shewana3_0778at 901.291 kb on + strand, within Shewana3_0778at 901.294 kb on - strand, within Shewana3_0778at 901.495 kb on - strand, within Shewana3_0778at 901.613 kb on + strand, within Shewana3_0778at 901.613 kb on + strand, within Shewana3_0778at 901.618 kb on + strand, within Shewana3_0778at 901.618 kb on + strand, within Shewana3_0778at 901.700 kb on - strand, within Shewana3_0778at 901.715 kb on - strand, within Shewana3_0778at 901.798 kb on - strand, within Shewana3_0778at 902.155 kb on - strand, within Shewana3_0779at 902.186 kb on - strand, within Shewana3_0779at 902.712 kb on + strand, within Shewana3_0780at 902.730 kb on - strand, within Shewana3_0780at 902.788 kb on + strand, within Shewana3_0780at 902.912 kb on - strand, within Shewana3_0780

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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899,813 + Shewana3_0777 0.56 -1.3
899,821 - Shewana3_0777 0.56 +1.1
899,836 + Shewana3_0777 0.57 -1.7
899,836 + Shewana3_0777 0.57 +0.4
899,844 - Shewana3_0777 0.58 +0.4
899,844 - Shewana3_0777 0.58 -1.8
899,882 + Shewana3_0777 0.60 +0.3
899,939 + Shewana3_0777 0.64 -0.2
900,205 + Shewana3_0777 0.81 +1.6
900,213 - Shewana3_0777 0.82 -0.1
900,236 + Shewana3_0777 0.83 -1.3
900,253 + Shewana3_0777 0.84 +0.5
900,317 - Shewana3_0777 0.88 -0.9
900,330 + Shewana3_0777 0.89 +0.5
900,480 + -1.3
900,499 + -1.7
900,551 + -1.4
900,560 + -1.2
900,703 + Shewana3_0778 0.11 -2.6
900,742 + Shewana3_0778 0.13 +0.5
900,954 + Shewana3_0778 0.29 +0.4
900,986 - Shewana3_0778 0.31 +0.8
900,993 - Shewana3_0778 0.31 -1.4
901,228 - Shewana3_0778 0.48 +0.2
901,291 + Shewana3_0778 0.53 -3.4
901,294 - Shewana3_0778 0.53 +0.5
901,495 - Shewana3_0778 0.67 +1.1
901,613 + Shewana3_0778 0.76 +0.0
901,613 + Shewana3_0778 0.76 +0.6
901,618 + Shewana3_0778 0.76 +0.5
901,618 + Shewana3_0778 0.76 +0.5
901,700 - Shewana3_0778 0.82 -0.3
901,715 - Shewana3_0778 0.83 +1.0
901,798 - Shewana3_0778 0.89 -0.1
902,155 - Shewana3_0779 0.60 +0.6
902,186 - Shewana3_0779 0.69 +0.5
902,712 + Shewana3_0780 0.13 -0.1
902,730 - Shewana3_0780 0.15 -1.1
902,788 + Shewana3_0780 0.21 -1.9
902,912 - Shewana3_0780 0.33 -3.4

Or see this region's nucleotide sequence