Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0138 and Shewana3_0139 are separated by 268 nucleotides Shewana3_0139 and Shewana3_0140 are separated by 25 nucleotides
Shewana3_0138: Shewana3_0138 - putative lipoprotein (RefSeq), at 157,777 to 158,553
_0138
Shewana3_0139: Shewana3_0139 - methyltransferase type 12 (RefSeq), at 158,822 to 159,589
_0139
Shewana3_0140: Shewana3_0140 - peptidase M14, carboxypeptidase A (RefSeq), at 159,615 to 161,594
_0140
Position (kb) 158
159
160 Strain fitness (log2 ratio) -2
-1
0
1
2 at 157.844 kb on + strand at 157.852 kb on - strand at 157.856 kb on + strand, within Shewana3_0138 at 158.153 kb on + strand, within Shewana3_0138 at 158.246 kb on + strand, within Shewana3_0138 at 158.254 kb on - strand, within Shewana3_0138 at 158.254 kb on - strand, within Shewana3_0138 at 158.379 kb on - strand, within Shewana3_0138 at 158.404 kb on + strand, within Shewana3_0138 at 158.430 kb on - strand, within Shewana3_0138 at 158.591 kb on - strand at 158.593 kb on + strand at 158.593 kb on + strand at 158.601 kb on - strand at 159.346 kb on + strand, within Shewana3_0139 at 159.380 kb on + strand, within Shewana3_0139 at 159.380 kb on + strand, within Shewana3_0139 at 159.413 kb on - strand, within Shewana3_0139 at 159.446 kb on - strand, within Shewana3_0139 at 159.572 kb on - strand at 159.682 kb on - strand at 159.721 kb on - strand at 159.822 kb on + strand, within Shewana3_0140 at 159.830 kb on - strand, within Shewana3_0140 at 159.901 kb on + strand, within Shewana3_0140 at 159.906 kb on + strand, within Shewana3_0140 at 159.914 kb on - strand, within Shewana3_0140 at 159.914 kb on - strand, within Shewana3_0140 at 159.914 kb on - strand, within Shewana3_0140 at 159.946 kb on + strand, within Shewana3_0140 at 159.965 kb on + strand, within Shewana3_0140 at 159.973 kb on - strand, within Shewana3_0140 at 159.973 kb on - strand, within Shewana3_0140 at 160.029 kb on - strand, within Shewana3_0140 at 160.079 kb on + strand, within Shewana3_0140 at 160.118 kb on - strand, within Shewana3_0140 at 160.205 kb on + strand, within Shewana3_0140 at 160.205 kb on + strand, within Shewana3_0140 at 160.214 kb on + strand, within Shewana3_0140 at 160.231 kb on + strand, within Shewana3_0140 at 160.292 kb on - strand, within Shewana3_0140 at 160.329 kb on - strand, within Shewana3_0140 at 160.426 kb on - strand, within Shewana3_0140 at 160.442 kb on + strand, within Shewana3_0140 at 160.450 kb on - strand, within Shewana3_0140 at 160.459 kb on - strand, within Shewana3_0140 at 160.536 kb on - strand, within Shewana3_0140
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 157,844 + +1.2 157,852 - -0.7 157,856 + Shewana3_0138 0.10 +0.7 158,153 + Shewana3_0138 0.48 +0.7 158,246 + Shewana3_0138 0.60 -1.6 158,254 - Shewana3_0138 0.61 -2.0 158,254 - Shewana3_0138 0.61 -2.1 158,379 - Shewana3_0138 0.77 +1.4 158,404 + Shewana3_0138 0.81 +1.0 158,430 - Shewana3_0138 0.84 -0.7 158,591 - +0.6 158,593 + -1.5 158,593 + +0.3 158,601 - -2.1 159,346 + Shewana3_0139 0.68 +0.7 159,380 + Shewana3_0139 0.73 +0.4 159,380 + Shewana3_0139 0.73 +0.7 159,413 - Shewana3_0139 0.77 -1.7 159,446 - Shewana3_0139 0.81 +0.1 159,572 - -1.3 159,682 - -1.4 159,721 - +0.8 159,822 + Shewana3_0140 0.10 +1.3 159,830 - Shewana3_0140 0.11 -1.0 159,901 + Shewana3_0140 0.14 -0.0 159,906 + Shewana3_0140 0.15 +0.4 159,914 - Shewana3_0140 0.15 +0.8 159,914 - Shewana3_0140 0.15 +1.9 159,914 - Shewana3_0140 0.15 -1.4 159,946 + Shewana3_0140 0.17 -1.9 159,965 + Shewana3_0140 0.18 -0.1 159,973 - Shewana3_0140 0.18 +0.7 159,973 - Shewana3_0140 0.18 -1.3 160,029 - Shewana3_0140 0.21 -1.1 160,079 + Shewana3_0140 0.23 -1.9 160,118 - Shewana3_0140 0.25 +1.1 160,205 + Shewana3_0140 0.30 -1.4 160,205 + Shewana3_0140 0.30 +0.6 160,214 + Shewana3_0140 0.30 +0.8 160,231 + Shewana3_0140 0.31 -0.3 160,292 - Shewana3_0140 0.34 +0.2 160,329 - Shewana3_0140 0.36 -1.9 160,426 - Shewana3_0140 0.41 +1.1 160,442 + Shewana3_0140 0.42 -0.2 160,450 - Shewana3_0140 0.42 +0.5 160,459 - Shewana3_0140 0.43 -1.0 160,536 - Shewana3_0140 0.47 -0.5
Or see this region's nucleotide sequence