Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4353

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4352 and Shewana3_4353 overlap by 8 nucleotidesShewana3_4353 and Shewana3_4354 are separated by 76 nucleotides Shewana3_4352: Shewana3_4352 - hypothetical protein (RefSeq), at 236,921 to 238,486 _4352 Shewana3_4353: Shewana3_4353 - hypothetical protein (RefSeq), at 238,479 to 238,871 _4353 Shewana3_4354: Shewana3_4354 - UBA/THIF-type NAD/FAD binding protein (RefSeq), at 238,948 to 240,675 _4354 Position (kb) 238 239Strain fitness (log2 ratio) -2 -1 0 1at 237.770 kb on + strand, within Shewana3_4352at 237.775 kb on + strand, within Shewana3_4352at 237.882 kb on - strand, within Shewana3_4352at 237.891 kb on + strand, within Shewana3_4352at 237.891 kb on + strand, within Shewana3_4352at 237.892 kb on + strand, within Shewana3_4352at 237.899 kb on - strand, within Shewana3_4352at 237.917 kb on - strand, within Shewana3_4352at 237.927 kb on - strand, within Shewana3_4352at 237.945 kb on - strand, within Shewana3_4352at 237.995 kb on + strand, within Shewana3_4352at 238.003 kb on - strand, within Shewana3_4352at 238.004 kb on - strand, within Shewana3_4352at 238.041 kb on + strand, within Shewana3_4352at 238.041 kb on + strand, within Shewana3_4352at 238.041 kb on + strand, within Shewana3_4352at 238.041 kb on + strand, within Shewana3_4352at 238.049 kb on - strand, within Shewana3_4352at 238.049 kb on - strand, within Shewana3_4352at 238.117 kb on - strand, within Shewana3_4352at 238.231 kb on + strand, within Shewana3_4352at 238.231 kb on + strand, within Shewana3_4352at 238.239 kb on - strand, within Shewana3_4352at 238.239 kb on - strand, within Shewana3_4352at 238.239 kb on - strand, within Shewana3_4352at 238.269 kb on + strand, within Shewana3_4352at 238.269 kb on + strand, within Shewana3_4352at 238.269 kb on + strand, within Shewana3_4352at 238.277 kb on - strand, within Shewana3_4352at 238.277 kb on - strand, within Shewana3_4352at 238.277 kb on - strand, within Shewana3_4352at 238.277 kb on - strand, within Shewana3_4352at 238.277 kb on - strand, within Shewana3_4352at 238.437 kb on - strandat 238.624 kb on + strand, within Shewana3_4353at 238.669 kb on - strand, within Shewana3_4353at 238.789 kb on - strand, within Shewana3_4353at 238.791 kb on - strand, within Shewana3_4353at 238.791 kb on - strand, within Shewana3_4353at 238.824 kb on - strand, within Shewana3_4353at 239.029 kb on - strandat 239.067 kb on - strandat 239.261 kb on + strand, within Shewana3_4354at 239.373 kb on + strand, within Shewana3_4354at 239.630 kb on - strand, within Shewana3_4354at 239.688 kb on + strand, within Shewana3_4354at 239.701 kb on + strand, within Shewana3_4354at 239.739 kb on - strand, within Shewana3_4354at 239.744 kb on + strand, within Shewana3_4354at 239.767 kb on - strand, within Shewana3_4354at 239.767 kb on - strand, within Shewana3_4354at 239.859 kb on + strand, within Shewana3_4354

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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237,770 + Shewana3_4352 0.54 +0.9
237,775 + Shewana3_4352 0.55 -0.9
237,882 - Shewana3_4352 0.61 -0.7
237,891 + Shewana3_4352 0.62 -0.9
237,891 + Shewana3_4352 0.62 -0.4
237,892 + Shewana3_4352 0.62 +0.4
237,899 - Shewana3_4352 0.62 +1.3
237,917 - Shewana3_4352 0.64 +0.8
237,927 - Shewana3_4352 0.64 -0.1
237,945 - Shewana3_4352 0.65 +0.6
237,995 + Shewana3_4352 0.69 +0.2
238,003 - Shewana3_4352 0.69 -1.6
238,004 - Shewana3_4352 0.69 -1.7
238,041 + Shewana3_4352 0.72 -1.2
238,041 + Shewana3_4352 0.72 -2.0
238,041 + Shewana3_4352 0.72 +0.6
238,041 + Shewana3_4352 0.72 +1.3
238,049 - Shewana3_4352 0.72 +0.2
238,049 - Shewana3_4352 0.72 +0.5
238,117 - Shewana3_4352 0.76 +0.2
238,231 + Shewana3_4352 0.84 +1.0
238,231 + Shewana3_4352 0.84 +1.2
238,239 - Shewana3_4352 0.84 +0.4
238,239 - Shewana3_4352 0.84 -1.4
238,239 - Shewana3_4352 0.84 -1.5
238,269 + Shewana3_4352 0.86 -1.6
238,269 + Shewana3_4352 0.86 +0.8
238,269 + Shewana3_4352 0.86 +1.2
238,277 - Shewana3_4352 0.87 +0.5
238,277 - Shewana3_4352 0.87 -1.6
238,277 - Shewana3_4352 0.87 +0.4
238,277 - Shewana3_4352 0.87 +0.6
238,277 - Shewana3_4352 0.87 +1.2
238,437 - +0.6
238,624 + Shewana3_4353 0.37 +0.5
238,669 - Shewana3_4353 0.48 -0.8
238,789 - Shewana3_4353 0.79 +0.5
238,791 - Shewana3_4353 0.79 +1.1
238,791 - Shewana3_4353 0.79 +0.5
238,824 - Shewana3_4353 0.88 +0.5
239,029 - -1.4
239,067 - +0.8
239,261 + Shewana3_4354 0.18 +0.6
239,373 + Shewana3_4354 0.25 +0.2
239,630 - Shewana3_4354 0.39 -1.0
239,688 + Shewana3_4354 0.43 -2.1
239,701 + Shewana3_4354 0.44 +1.7
239,739 - Shewana3_4354 0.46 +0.2
239,744 + Shewana3_4354 0.46 +0.2
239,767 - Shewana3_4354 0.47 -1.7
239,767 - Shewana3_4354 0.47 -1.7
239,859 + Shewana3_4354 0.53 -2.5

Or see this region's nucleotide sequence