Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4318 and Shewana3_4319 are separated by 2 nucleotides Shewana3_4319 and Shewana3_4320 are separated by 125 nucleotides Shewana3_4320 and Shewana3_4321 overlap by 4 nucleotides
Shewana3_4318: Shewana3_4318 - transposase Tn3 family protein (RefSeq), at 206,336 to 209,230
_4318
Shewana3_4319: Shewana3_4319 - resolvase domain-containing protein (RefSeq), at 209,233 to 209,793
_4319
Shewana3_4320: Shewana3_4320 - signal peptidase II (RefSeq), at 209,919 to 210,998
_4320
Shewana3_4321: Shewana3_4321 - no description, at 210,995 to 213,400
_4321
Position (kb) 209
210
211 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 208.977 kb on + strand at 208.985 kb on - strand at 209.038 kb on + strand at 209.163 kb on + strand at 209.381 kb on + strand, within Shewana3_4319 at 209.472 kb on + strand, within Shewana3_4319 at 209.608 kb on + strand, within Shewana3_4319 at 209.723 kb on - strand, within Shewana3_4319 at 209.764 kb on - strand at 209.767 kb on + strand at 209.898 kb on + strand at 209.905 kb on + strand at 209.918 kb on - strand at 209.925 kb on - strand at 210.099 kb on + strand, within Shewana3_4320 at 210.177 kb on - strand, within Shewana3_4320 at 210.190 kb on + strand, within Shewana3_4320 at 210.325 kb on - strand, within Shewana3_4320 at 210.552 kb on + strand, within Shewana3_4320 at 210.646 kb on + strand, within Shewana3_4320 at 210.832 kb on - strand, within Shewana3_4320 at 210.965 kb on - strand at 211.018 kb on - strand at 211.091 kb on + strand at 211.156 kb on - strand at 211.172 kb on - strand at 211.227 kb on - strand at 211.283 kb on + strand, within Shewana3_4321 at 211.291 kb on - strand, within Shewana3_4321 at 211.307 kb on - strand, within Shewana3_4321 at 211.377 kb on - strand, within Shewana3_4321 at 211.390 kb on + strand, within Shewana3_4321 at 211.474 kb on + strand, within Shewana3_4321 at 211.538 kb on + strand, within Shewana3_4321 at 211.573 kb on - strand, within Shewana3_4321 at 211.738 kb on + strand, within Shewana3_4321 at 211.875 kb on + strand, within Shewana3_4321 at 211.912 kb on - strand, within Shewana3_4321 at 211.950 kb on - strand, within Shewana3_4321 at 211.954 kb on - strand, within Shewana3_4321
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 208,977 + +0.3 208,985 - +0.7 209,038 + -1.3 209,163 + +0.7 209,381 + Shewana3_4319 0.26 +0.3 209,472 + Shewana3_4319 0.43 +0.3 209,608 + Shewana3_4319 0.67 -1.0 209,723 - Shewana3_4319 0.87 +0.5 209,764 - -1.2 209,767 + +1.4 209,898 + -2.0 209,905 + +0.4 209,918 - +0.2 209,925 - +0.2 210,099 + Shewana3_4320 0.17 +0.3 210,177 - Shewana3_4320 0.24 +0.1 210,190 + Shewana3_4320 0.25 +0.3 210,325 - Shewana3_4320 0.38 +0.4 210,552 + Shewana3_4320 0.59 -0.8 210,646 + Shewana3_4320 0.67 +1.3 210,832 - Shewana3_4320 0.85 +0.4 210,965 - -0.1 211,018 - +1.1 211,091 + -1.4 211,156 - -1.6 211,172 - -0.8 211,227 - -1.2 211,283 + Shewana3_4321 0.12 -1.0 211,291 - Shewana3_4321 0.12 +0.6 211,307 - Shewana3_4321 0.13 -1.6 211,377 - Shewana3_4321 0.16 +0.5 211,390 + Shewana3_4321 0.16 +0.1 211,474 + Shewana3_4321 0.20 +0.1 211,538 + Shewana3_4321 0.23 -2.8 211,573 - Shewana3_4321 0.24 -1.8 211,738 + Shewana3_4321 0.31 +0.4 211,875 + Shewana3_4321 0.37 +0.6 211,912 - Shewana3_4321 0.38 +0.2 211,950 - Shewana3_4321 0.40 -2.2 211,954 - Shewana3_4321 0.40 +0.5
Or see this region's nucleotide sequence