Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4267 and Shewana3_4268 are separated by 727 nucleotides Shewana3_4268 and Shewana3_4269 are separated by 8 nucleotides Shewana3_4269 and Shewana3_4270 are separated by 98 nucleotides
Shewana3_4267: Shewana3_4267 - hypothetical protein (RefSeq), at 144,910 to 145,329
_4267
Shewana3_4268: Shewana3_4268 - hypothetical protein (RefSeq), at 146,057 to 147,124
_4268
Shewana3_4269: Shewana3_4269 - hypothetical protein (RefSeq), at 147,133 to 147,420
_4269
Shewana3_4270: Shewana3_4270 - hypothetical protein (RefSeq), at 147,519 to 148,514
_4270
Position (kb) 146
147
148 Strain fitness (log2 ratio) -1
0
1 at 145.099 kb on - strand, within Shewana3_4267 at 145.124 kb on + strand, within Shewana3_4267 at 145.201 kb on - strand, within Shewana3_4267 at 145.239 kb on - strand, within Shewana3_4267 at 145.273 kb on - strand, within Shewana3_4267 at 145.393 kb on - strand at 145.811 kb on + strand at 145.819 kb on - strand at 146.000 kb on + strand at 146.252 kb on - strand, within Shewana3_4268 at 146.572 kb on - strand, within Shewana3_4268 at 146.615 kb on + strand, within Shewana3_4268 at 146.669 kb on - strand, within Shewana3_4268 at 146.780 kb on + strand, within Shewana3_4268 at 146.780 kb on + strand, within Shewana3_4268 at 146.928 kb on + strand, within Shewana3_4268 at 147.126 kb on - strand at 147.133 kb on - strand at 147.611 kb on + strand at 147.714 kb on - strand, within Shewana3_4270 at 147.811 kb on - strand, within Shewana3_4270 at 147.811 kb on - strand, within Shewana3_4270 at 147.930 kb on + strand, within Shewana3_4270 at 147.930 kb on + strand, within Shewana3_4270
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 145,099 - Shewana3_4267 0.45 +0.5 145,124 + Shewana3_4267 0.51 -1.6 145,201 - Shewana3_4267 0.69 -1.4 145,239 - Shewana3_4267 0.78 -1.6 145,273 - Shewana3_4267 0.86 -0.2 145,393 - +0.3 145,811 + +1.0 145,819 - +0.3 146,000 + +0.5 146,252 - Shewana3_4268 0.18 +0.7 146,572 - Shewana3_4268 0.48 +0.2 146,615 + Shewana3_4268 0.52 +1.1 146,669 - Shewana3_4268 0.57 +1.4 146,780 + Shewana3_4268 0.68 -0.9 146,780 + Shewana3_4268 0.68 -1.7 146,928 + Shewana3_4268 0.82 +0.4 147,126 - +0.8 147,133 - -1.1 147,611 + +0.5 147,714 - Shewana3_4270 0.20 +0.3 147,811 - Shewana3_4270 0.29 +0.7 147,811 - Shewana3_4270 0.29 -0.6 147,930 + Shewana3_4270 0.41 -0.3 147,930 + Shewana3_4270 0.41 -0.4
Or see this region's nucleotide sequence