Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4253 and Shewana3_4254 overlap by 14 nucleotides Shewana3_4254 and Shewana3_4255 are separated by 423 nucleotides Shewana3_4255 and Shewana3_4256 are separated by 9 nucleotides
Shewana3_4253: Shewana3_4253 - hypothetical protein (RefSeq), at 129,607 to 131,877
_4253
Shewana3_4254: Shewana3_4254 - phage integrase family protein (RefSeq), at 131,864 to 133,129
_4254
Shewana3_4255: Shewana3_4255 - hypothetical protein (RefSeq), at 133,553 to 133,855
_4255
Shewana3_4256: Shewana3_4256 - hypothetical protein (RefSeq), at 133,865 to 134,134
_4256
Position (kb)
131
132
133
134 Strain fitness (log2 ratio)
-2
-1
0
1 at 130.953 kb on - strand, within Shewana3_4253 at 131.049 kb on - strand, within Shewana3_4253 at 131.051 kb on + strand, within Shewana3_4253 at 131.114 kb on - strand, within Shewana3_4253 at 131.131 kb on + strand, within Shewana3_4253 at 131.206 kb on - strand, within Shewana3_4253 at 131.361 kb on - strand, within Shewana3_4253 at 131.419 kb on - strand, within Shewana3_4253 at 131.457 kb on + strand, within Shewana3_4253 at 131.476 kb on - strand, within Shewana3_4253 at 131.761 kb on - strand at 131.780 kb on - strand at 131.827 kb on + strand at 131.915 kb on - strand at 131.944 kb on + strand at 131.982 kb on - strand at 132.015 kb on - strand, within Shewana3_4254 at 132.042 kb on + strand, within Shewana3_4254 at 132.060 kb on + strand, within Shewana3_4254 at 132.060 kb on + strand, within Shewana3_4254 at 132.066 kb on - strand, within Shewana3_4254 at 132.246 kb on + strand, within Shewana3_4254 at 132.404 kb on + strand, within Shewana3_4254 at 132.587 kb on + strand, within Shewana3_4254 at 132.597 kb on - strand, within Shewana3_4254 at 132.660 kb on + strand, within Shewana3_4254 at 132.714 kb on + strand, within Shewana3_4254 at 132.714 kb on + strand, within Shewana3_4254 at 132.745 kb on - strand, within Shewana3_4254 at 132.745 kb on - strand, within Shewana3_4254 at 132.780 kb on - strand, within Shewana3_4254 at 132.898 kb on + strand, within Shewana3_4254 at 132.909 kb on + strand, within Shewana3_4254 at 132.917 kb on - strand, within Shewana3_4254 at 132.997 kb on - strand, within Shewana3_4254 at 133.282 kb on + strand at 133.655 kb on - strand, within Shewana3_4255 at 133.858 kb on - strand at 133.873 kb on + strand at 133.921 kb on + strand, within Shewana3_4256 at 134.038 kb on - strand, within Shewana3_4256
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 130,953 - Shewana3_4253 0.59 +0.2 131,049 - Shewana3_4253 0.63 -1.9 131,051 + Shewana3_4253 0.64 +0.3 131,114 - Shewana3_4253 0.66 +1.0 131,131 + Shewana3_4253 0.67 +0.3 131,206 - Shewana3_4253 0.70 -1.3 131,361 - Shewana3_4253 0.77 +0.8 131,419 - Shewana3_4253 0.80 -1.7 131,457 + Shewana3_4253 0.81 -0.9 131,476 - Shewana3_4253 0.82 +0.4 131,761 - +0.2 131,780 - -0.9 131,827 + +0.3 131,915 - -1.2 131,944 + +0.2 131,982 - +0.6 132,015 - Shewana3_4254 0.12 +0.7 132,042 + Shewana3_4254 0.14 +0.4 132,060 + Shewana3_4254 0.15 +0.5 132,060 + Shewana3_4254 0.15 +0.8 132,066 - Shewana3_4254 0.16 +0.5 132,246 + Shewana3_4254 0.30 -0.8 132,404 + Shewana3_4254 0.43 +0.7 132,587 + Shewana3_4254 0.57 +0.5 132,597 - Shewana3_4254 0.58 +0.3 132,660 + Shewana3_4254 0.63 +0.1 132,714 + Shewana3_4254 0.67 -0.9 132,714 + Shewana3_4254 0.67 -1.0 132,745 - Shewana3_4254 0.70 +0.4 132,745 - Shewana3_4254 0.70 +0.5 132,780 - Shewana3_4254 0.72 -0.4 132,898 + Shewana3_4254 0.82 +0.9 132,909 + Shewana3_4254 0.83 +0.3 132,917 - Shewana3_4254 0.83 -0.8 132,997 - Shewana3_4254 0.89 +0.6 133,282 + +0.3 133,655 - Shewana3_4255 0.34 +0.6 133,858 - +0.5 133,873 + +0.7 133,921 + Shewana3_4256 0.21 +1.3 134,038 - Shewana3_4256 0.64 +0.5
Or see this region's nucleotide sequence