Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4254

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4253 and Shewana3_4254 overlap by 14 nucleotidesShewana3_4254 and Shewana3_4255 are separated by 423 nucleotidesShewana3_4255 and Shewana3_4256 are separated by 9 nucleotides Shewana3_4253: Shewana3_4253 - hypothetical protein (RefSeq), at 129,607 to 131,877 _4253 Shewana3_4254: Shewana3_4254 - phage integrase family protein (RefSeq), at 131,864 to 133,129 _4254 Shewana3_4255: Shewana3_4255 - hypothetical protein (RefSeq), at 133,553 to 133,855 _4255 Shewana3_4256: Shewana3_4256 - hypothetical protein (RefSeq), at 133,865 to 134,134 _4256 Position (kb) 131 132 133 134Strain fitness (log2 ratio) -2 -1 0 1at 130.953 kb on - strand, within Shewana3_4253at 131.049 kb on - strand, within Shewana3_4253at 131.051 kb on + strand, within Shewana3_4253at 131.114 kb on - strand, within Shewana3_4253at 131.131 kb on + strand, within Shewana3_4253at 131.206 kb on - strand, within Shewana3_4253at 131.361 kb on - strand, within Shewana3_4253at 131.419 kb on - strand, within Shewana3_4253at 131.457 kb on + strand, within Shewana3_4253at 131.476 kb on - strand, within Shewana3_4253at 131.761 kb on - strandat 131.780 kb on - strandat 131.827 kb on + strandat 131.915 kb on - strandat 131.944 kb on + strandat 131.982 kb on - strandat 132.015 kb on - strand, within Shewana3_4254at 132.042 kb on + strand, within Shewana3_4254at 132.060 kb on + strand, within Shewana3_4254at 132.060 kb on + strand, within Shewana3_4254at 132.066 kb on - strand, within Shewana3_4254at 132.246 kb on + strand, within Shewana3_4254at 132.404 kb on + strand, within Shewana3_4254at 132.587 kb on + strand, within Shewana3_4254at 132.597 kb on - strand, within Shewana3_4254at 132.660 kb on + strand, within Shewana3_4254at 132.714 kb on + strand, within Shewana3_4254at 132.714 kb on + strand, within Shewana3_4254at 132.745 kb on - strand, within Shewana3_4254at 132.745 kb on - strand, within Shewana3_4254at 132.780 kb on - strand, within Shewana3_4254at 132.898 kb on + strand, within Shewana3_4254at 132.909 kb on + strand, within Shewana3_4254at 132.917 kb on - strand, within Shewana3_4254at 132.997 kb on - strand, within Shewana3_4254at 133.282 kb on + strandat 133.655 kb on - strand, within Shewana3_4255at 133.858 kb on - strandat 133.873 kb on + strandat 133.921 kb on + strand, within Shewana3_4256at 134.038 kb on - strand, within Shewana3_4256

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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130,953 - Shewana3_4253 0.59 +0.2
131,049 - Shewana3_4253 0.63 -1.9
131,051 + Shewana3_4253 0.64 +0.3
131,114 - Shewana3_4253 0.66 +1.0
131,131 + Shewana3_4253 0.67 +0.3
131,206 - Shewana3_4253 0.70 -1.3
131,361 - Shewana3_4253 0.77 +0.8
131,419 - Shewana3_4253 0.80 -1.7
131,457 + Shewana3_4253 0.81 -0.9
131,476 - Shewana3_4253 0.82 +0.4
131,761 - +0.2
131,780 - -0.9
131,827 + +0.3
131,915 - -1.2
131,944 + +0.2
131,982 - +0.6
132,015 - Shewana3_4254 0.12 +0.7
132,042 + Shewana3_4254 0.14 +0.4
132,060 + Shewana3_4254 0.15 +0.5
132,060 + Shewana3_4254 0.15 +0.8
132,066 - Shewana3_4254 0.16 +0.5
132,246 + Shewana3_4254 0.30 -0.8
132,404 + Shewana3_4254 0.43 +0.7
132,587 + Shewana3_4254 0.57 +0.5
132,597 - Shewana3_4254 0.58 +0.3
132,660 + Shewana3_4254 0.63 +0.1
132,714 + Shewana3_4254 0.67 -0.9
132,714 + Shewana3_4254 0.67 -1.0
132,745 - Shewana3_4254 0.70 +0.4
132,745 - Shewana3_4254 0.70 +0.5
132,780 - Shewana3_4254 0.72 -0.4
132,898 + Shewana3_4254 0.82 +0.9
132,909 + Shewana3_4254 0.83 +0.3
132,917 - Shewana3_4254 0.83 -0.8
132,997 - Shewana3_4254 0.89 +0.6
133,282 + +0.3
133,655 - Shewana3_4255 0.34 +0.6
133,858 - +0.5
133,873 + +0.7
133,921 + Shewana3_4256 0.21 +1.3
134,038 - Shewana3_4256 0.64 +0.5

Or see this region's nucleotide sequence