Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4245

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4244 and Shewana3_4245 are separated by 282 nucleotidesShewana3_4245 and Shewana3_4246 overlap by 4 nucleotides Shewana3_4244: Shewana3_4244 - HsdR family type I site-specific deoxyribonuclease (RefSeq), at 117,132 to 120,386 _4244 Shewana3_4245: Shewana3_4245 - mobile mystery protein B (RefSeq), at 120,669 to 121,280 _4245 Shewana3_4246: Shewana3_4246 - XRE family transcriptional regulator (RefSeq), at 121,277 to 121,765 _4246 Position (kb) 120 121 122Strain fitness (log2 ratio) -3 -2 -1 0 1at 120.000 kb on - strand, within Shewana3_4244at 120.027 kb on + strand, within Shewana3_4244at 120.035 kb on - strand, within Shewana3_4244at 120.407 kb on - strandat 120.542 kb on + strandat 120.558 kb on + strandat 120.592 kb on - strandat 120.743 kb on - strand, within Shewana3_4245at 120.798 kb on + strand, within Shewana3_4245at 120.806 kb on + strand, within Shewana3_4245at 120.928 kb on - strand, within Shewana3_4245at 120.928 kb on - strand, within Shewana3_4245at 121.022 kb on + strand, within Shewana3_4245at 121.120 kb on - strand, within Shewana3_4245at 121.152 kb on + strand, within Shewana3_4245at 121.257 kb on - strandat 121.972 kb on - strandat 122.091 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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120,000 - Shewana3_4244 0.88 -1.4
120,027 + Shewana3_4244 0.89 +1.4
120,035 - Shewana3_4244 0.89 +0.5
120,407 - -0.6
120,542 + +0.1
120,558 + -3.3
120,592 - -2.0
120,743 - Shewana3_4245 0.12 +0.9
120,798 + Shewana3_4245 0.21 +0.1
120,806 + Shewana3_4245 0.22 -0.5
120,928 - Shewana3_4245 0.42 -1.5
120,928 - Shewana3_4245 0.42 -1.5
121,022 + Shewana3_4245 0.58 -1.8
121,120 - Shewana3_4245 0.74 +0.6
121,152 + Shewana3_4245 0.79 -1.6
121,257 - +0.8
121,972 - -1.2
122,091 - +0.6

Or see this region's nucleotide sequence