Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4213 and Shewana3_4214 are separated by 185 nucleotides Shewana3_4214 and Shewana3_4215 are separated by 55 nucleotides
Shewana3_4213: Shewana3_4213 - hypothetical protein (RefSeq), at 80,198 to 84,442
_4213
Shewana3_4214: Shewana3_4214 - hypothetical protein (RefSeq), at 84,628 to 85,533
_4214
Shewana3_4215: Shewana3_4215 - helicase domain-containing protein (RefSeq), at 85,589 to 87,583
_4215
Position (kb)
84
85
86 Strain fitness (log2 ratio)
-2
-1
0
1 at 83.757 kb on + strand, within Shewana3_4213 at 83.877 kb on - strand, within Shewana3_4213 at 83.929 kb on + strand, within Shewana3_4213 at 84.168 kb on - strand at 84.235 kb on - strand at 84.396 kb on + strand at 84.396 kb on + strand at 84.396 kb on + strand at 84.404 kb on - strand at 84.475 kb on - strand at 84.761 kb on - strand, within Shewana3_4214 at 84.815 kb on - strand, within Shewana3_4214 at 84.817 kb on + strand, within Shewana3_4214 at 84.835 kb on - strand, within Shewana3_4214 at 84.835 kb on - strand, within Shewana3_4214 at 85.001 kb on + strand, within Shewana3_4214 at 85.009 kb on - strand, within Shewana3_4214 at 85.050 kb on + strand, within Shewana3_4214 at 85.104 kb on - strand, within Shewana3_4214 at 85.104 kb on - strand, within Shewana3_4214 at 85.106 kb on + strand, within Shewana3_4214 at 85.106 kb on + strand, within Shewana3_4214 at 85.114 kb on - strand, within Shewana3_4214 at 85.183 kb on + strand, within Shewana3_4214 at 85.430 kb on + strand, within Shewana3_4214 at 85.438 kb on - strand, within Shewana3_4214 at 85.599 kb on - strand at 85.784 kb on - strand at 85.882 kb on + strand, within Shewana3_4215 at 85.890 kb on - strand, within Shewana3_4215 at 85.892 kb on + strand, within Shewana3_4215 at 85.930 kb on - strand, within Shewana3_4215 at 86.108 kb on + strand, within Shewana3_4215 at 86.225 kb on + strand, within Shewana3_4215 at 86.243 kb on - strand, within Shewana3_4215 at 86.300 kb on + strand, within Shewana3_4215 at 86.338 kb on + strand, within Shewana3_4215 at 86.346 kb on - strand, within Shewana3_4215
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 83,757 + Shewana3_4213 0.84 -1.3 83,877 - Shewana3_4213 0.87 +1.1 83,929 + Shewana3_4213 0.88 +0.1 84,168 - -2.0 84,235 - +1.2 84,396 + +1.2 84,396 + +0.3 84,396 + +0.5 84,404 - -1.2 84,475 - -0.4 84,761 - Shewana3_4214 0.15 -1.8 84,815 - Shewana3_4214 0.21 +1.1 84,817 + Shewana3_4214 0.21 +0.1 84,835 - Shewana3_4214 0.23 -0.5 84,835 - Shewana3_4214 0.23 +0.3 85,001 + Shewana3_4214 0.41 +0.6 85,009 - Shewana3_4214 0.42 +0.5 85,050 + Shewana3_4214 0.47 +0.5 85,104 - Shewana3_4214 0.53 -0.7 85,104 - Shewana3_4214 0.53 +0.2 85,106 + Shewana3_4214 0.53 -1.6 85,106 + Shewana3_4214 0.53 -1.8 85,114 - Shewana3_4214 0.54 -1.6 85,183 + Shewana3_4214 0.61 -1.6 85,430 + Shewana3_4214 0.89 -2.1 85,438 - Shewana3_4214 0.89 -1.5 85,599 - -0.1 85,784 - -0.1 85,882 + Shewana3_4215 0.15 +0.3 85,890 - Shewana3_4215 0.15 -0.4 85,892 + Shewana3_4215 0.15 +1.3 85,930 - Shewana3_4215 0.17 +0.4 86,108 + Shewana3_4215 0.26 -0.1 86,225 + Shewana3_4215 0.32 -0.3 86,243 - Shewana3_4215 0.33 -2.2 86,300 + Shewana3_4215 0.36 -1.3 86,338 + Shewana3_4215 0.38 +1.2 86,346 - Shewana3_4215 0.38 -1.6
Or see this region's nucleotide sequence