Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4214

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4213 and Shewana3_4214 are separated by 185 nucleotidesShewana3_4214 and Shewana3_4215 are separated by 55 nucleotides Shewana3_4213: Shewana3_4213 - hypothetical protein (RefSeq), at 80,198 to 84,442 _4213 Shewana3_4214: Shewana3_4214 - hypothetical protein (RefSeq), at 84,628 to 85,533 _4214 Shewana3_4215: Shewana3_4215 - helicase domain-containing protein (RefSeq), at 85,589 to 87,583 _4215 Position (kb) 84 85 86Strain fitness (log2 ratio) -2 -1 0 1at 83.757 kb on + strand, within Shewana3_4213at 83.877 kb on - strand, within Shewana3_4213at 83.929 kb on + strand, within Shewana3_4213at 84.168 kb on - strandat 84.235 kb on - strandat 84.396 kb on + strandat 84.396 kb on + strandat 84.396 kb on + strandat 84.404 kb on - strandat 84.475 kb on - strandat 84.761 kb on - strand, within Shewana3_4214at 84.815 kb on - strand, within Shewana3_4214at 84.817 kb on + strand, within Shewana3_4214at 84.835 kb on - strand, within Shewana3_4214at 84.835 kb on - strand, within Shewana3_4214at 85.001 kb on + strand, within Shewana3_4214at 85.009 kb on - strand, within Shewana3_4214at 85.050 kb on + strand, within Shewana3_4214at 85.104 kb on - strand, within Shewana3_4214at 85.104 kb on - strand, within Shewana3_4214at 85.106 kb on + strand, within Shewana3_4214at 85.106 kb on + strand, within Shewana3_4214at 85.114 kb on - strand, within Shewana3_4214at 85.183 kb on + strand, within Shewana3_4214at 85.430 kb on + strand, within Shewana3_4214at 85.438 kb on - strand, within Shewana3_4214at 85.599 kb on - strandat 85.784 kb on - strandat 85.882 kb on + strand, within Shewana3_4215at 85.890 kb on - strand, within Shewana3_4215at 85.892 kb on + strand, within Shewana3_4215at 85.930 kb on - strand, within Shewana3_4215at 86.108 kb on + strand, within Shewana3_4215at 86.225 kb on + strand, within Shewana3_4215at 86.243 kb on - strand, within Shewana3_4215at 86.300 kb on + strand, within Shewana3_4215at 86.338 kb on + strand, within Shewana3_4215at 86.346 kb on - strand, within Shewana3_4215

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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83,757 + Shewana3_4213 0.84 -1.3
83,877 - Shewana3_4213 0.87 +1.1
83,929 + Shewana3_4213 0.88 +0.1
84,168 - -2.0
84,235 - +1.2
84,396 + +1.2
84,396 + +0.3
84,396 + +0.5
84,404 - -1.2
84,475 - -0.4
84,761 - Shewana3_4214 0.15 -1.8
84,815 - Shewana3_4214 0.21 +1.1
84,817 + Shewana3_4214 0.21 +0.1
84,835 - Shewana3_4214 0.23 -0.5
84,835 - Shewana3_4214 0.23 +0.3
85,001 + Shewana3_4214 0.41 +0.6
85,009 - Shewana3_4214 0.42 +0.5
85,050 + Shewana3_4214 0.47 +0.5
85,104 - Shewana3_4214 0.53 -0.7
85,104 - Shewana3_4214 0.53 +0.2
85,106 + Shewana3_4214 0.53 -1.6
85,106 + Shewana3_4214 0.53 -1.8
85,114 - Shewana3_4214 0.54 -1.6
85,183 + Shewana3_4214 0.61 -1.6
85,430 + Shewana3_4214 0.89 -2.1
85,438 - Shewana3_4214 0.89 -1.5
85,599 - -0.1
85,784 - -0.1
85,882 + Shewana3_4215 0.15 +0.3
85,890 - Shewana3_4215 0.15 -0.4
85,892 + Shewana3_4215 0.15 +1.3
85,930 - Shewana3_4215 0.17 +0.4
86,108 + Shewana3_4215 0.26 -0.1
86,225 + Shewana3_4215 0.32 -0.3
86,243 - Shewana3_4215 0.33 -2.2
86,300 + Shewana3_4215 0.36 -1.3
86,338 + Shewana3_4215 0.38 +1.2
86,346 - Shewana3_4215 0.38 -1.6

Or see this region's nucleotide sequence