Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4168 and Shewana3_4169 are separated by 143 nucleotides Shewana3_4169 and Shewana3_4170 are separated by 399 nucleotides
Shewana3_4168: Shewana3_4168 - hypothetical protein (RefSeq), at 33,318 to 34,007
_4168
Shewana3_4169: Shewana3_4169 - hypothetical protein (RefSeq), at 34,151 to 35,299
_4169
Shewana3_4170: Shewana3_4170 - hypothetical protein (RefSeq), at 35,699 to 36,355
_4170
Position (kb)
34
35
36 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 33.250 kb on + strand at 33.281 kb on - strand at 33.525 kb on - strand, within Shewana3_4168 at 33.566 kb on + strand, within Shewana3_4168 at 33.726 kb on + strand, within Shewana3_4168 at 33.734 kb on - strand, within Shewana3_4168 at 33.793 kb on - strand, within Shewana3_4168 at 33.819 kb on + strand, within Shewana3_4168 at 34.002 kb on + strand at 34.100 kb on + strand at 34.240 kb on + strand at 34.240 kb on + strand at 34.249 kb on + strand at 34.509 kb on - strand, within Shewana3_4169 at 34.511 kb on + strand, within Shewana3_4169 at 34.729 kb on - strand, within Shewana3_4169 at 34.991 kb on + strand, within Shewana3_4169 at 35.049 kb on - strand, within Shewana3_4169 at 35.133 kb on - strand, within Shewana3_4169 at 35.327 kb on + strand at 35.327 kb on + strand at 35.363 kb on - strand at 35.536 kb on - strand at 35.575 kb on - strand at 35.634 kb on - strand at 35.645 kb on + strand at 35.645 kb on + strand at 35.645 kb on + strand at 35.653 kb on - strand at 35.728 kb on - strand at 35.741 kb on + strand at 35.874 kb on + strand, within Shewana3_4170 at 35.917 kb on - strand, within Shewana3_4170 at 35.936 kb on - strand, within Shewana3_4170 at 35.950 kb on + strand, within Shewana3_4170 at 35.996 kb on - strand, within Shewana3_4170 at 36.014 kb on + strand, within Shewana3_4170 at 36.074 kb on - strand, within Shewana3_4170 at 36.188 kb on + strand, within Shewana3_4170 at 36.188 kb on + strand, within Shewana3_4170 at 36.191 kb on - strand, within Shewana3_4170 at 36.231 kb on + strand, within Shewana3_4170 at 36.266 kb on - strand, within Shewana3_4170 at 36.269 kb on + strand, within Shewana3_4170 at 36.287 kb on + strand, within Shewana3_4170
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 33,250 + -1.2 33,281 - +0.8 33,525 - Shewana3_4168 0.30 -2.8 33,566 + Shewana3_4168 0.36 -1.6 33,726 + Shewana3_4168 0.59 +1.3 33,734 - Shewana3_4168 0.60 +0.4 33,793 - Shewana3_4168 0.69 +0.7 33,819 + Shewana3_4168 0.73 -0.2 34,002 + -1.3 34,100 + -2.1 34,240 + +0.7 34,240 + -1.5 34,249 + +1.1 34,509 - Shewana3_4169 0.31 +0.5 34,511 + Shewana3_4169 0.31 -1.7 34,729 - Shewana3_4169 0.50 -1.6 34,991 + Shewana3_4169 0.73 +0.9 35,049 - Shewana3_4169 0.78 -1.4 35,133 - Shewana3_4169 0.85 -0.1 35,327 + +0.7 35,327 + -0.8 35,363 - +1.2 35,536 - +0.7 35,575 - -0.4 35,634 - +1.4 35,645 + -1.5 35,645 + -2.0 35,645 + +0.0 35,653 - +1.2 35,728 - +0.0 35,741 + -1.9 35,874 + Shewana3_4170 0.27 -0.9 35,917 - Shewana3_4170 0.33 -0.1 35,936 - Shewana3_4170 0.36 -1.4 35,950 + Shewana3_4170 0.38 -2.4 35,996 - Shewana3_4170 0.45 +0.8 36,014 + Shewana3_4170 0.48 -1.4 36,074 - Shewana3_4170 0.57 +0.9 36,188 + Shewana3_4170 0.74 -0.3 36,188 + Shewana3_4170 0.74 -1.5 36,191 - Shewana3_4170 0.75 +1.0 36,231 + Shewana3_4170 0.81 +0.9 36,266 - Shewana3_4170 0.86 +1.1 36,269 + Shewana3_4170 0.87 +0.8 36,287 + Shewana3_4170 0.89 -0.0
Or see this region's nucleotide sequence