Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4169

Experiment: L-Isoleucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_4168 and Shewana3_4169 are separated by 143 nucleotidesShewana3_4169 and Shewana3_4170 are separated by 399 nucleotides Shewana3_4168: Shewana3_4168 - hypothetical protein (RefSeq), at 33,318 to 34,007 _4168 Shewana3_4169: Shewana3_4169 - hypothetical protein (RefSeq), at 34,151 to 35,299 _4169 Shewana3_4170: Shewana3_4170 - hypothetical protein (RefSeq), at 35,699 to 36,355 _4170 Position (kb) 34 35 36Strain fitness (log2 ratio) -3 -2 -1 0 1at 33.250 kb on + strandat 33.281 kb on - strandat 33.525 kb on - strand, within Shewana3_4168at 33.566 kb on + strand, within Shewana3_4168at 33.726 kb on + strand, within Shewana3_4168at 33.734 kb on - strand, within Shewana3_4168at 33.793 kb on - strand, within Shewana3_4168at 33.819 kb on + strand, within Shewana3_4168at 34.002 kb on + strandat 34.100 kb on + strandat 34.240 kb on + strandat 34.240 kb on + strandat 34.249 kb on + strandat 34.509 kb on - strand, within Shewana3_4169at 34.511 kb on + strand, within Shewana3_4169at 34.729 kb on - strand, within Shewana3_4169at 34.991 kb on + strand, within Shewana3_4169at 35.049 kb on - strand, within Shewana3_4169at 35.133 kb on - strand, within Shewana3_4169at 35.327 kb on + strandat 35.327 kb on + strandat 35.363 kb on - strandat 35.536 kb on - strandat 35.575 kb on - strandat 35.634 kb on - strandat 35.645 kb on + strandat 35.645 kb on + strandat 35.645 kb on + strandat 35.653 kb on - strandat 35.728 kb on - strandat 35.741 kb on + strandat 35.874 kb on + strand, within Shewana3_4170at 35.917 kb on - strand, within Shewana3_4170at 35.936 kb on - strand, within Shewana3_4170at 35.950 kb on + strand, within Shewana3_4170at 35.996 kb on - strand, within Shewana3_4170at 36.014 kb on + strand, within Shewana3_4170at 36.074 kb on - strand, within Shewana3_4170at 36.188 kb on + strand, within Shewana3_4170at 36.188 kb on + strand, within Shewana3_4170at 36.191 kb on - strand, within Shewana3_4170at 36.231 kb on + strand, within Shewana3_4170at 36.266 kb on - strand, within Shewana3_4170at 36.269 kb on + strand, within Shewana3_4170at 36.287 kb on + strand, within Shewana3_4170

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
remove
33,250 + -1.2
33,281 - +0.8
33,525 - Shewana3_4168 0.30 -2.8
33,566 + Shewana3_4168 0.36 -1.6
33,726 + Shewana3_4168 0.59 +1.3
33,734 - Shewana3_4168 0.60 +0.4
33,793 - Shewana3_4168 0.69 +0.7
33,819 + Shewana3_4168 0.73 -0.2
34,002 + -1.3
34,100 + -2.1
34,240 + +0.7
34,240 + -1.5
34,249 + +1.1
34,509 - Shewana3_4169 0.31 +0.5
34,511 + Shewana3_4169 0.31 -1.7
34,729 - Shewana3_4169 0.50 -1.6
34,991 + Shewana3_4169 0.73 +0.9
35,049 - Shewana3_4169 0.78 -1.4
35,133 - Shewana3_4169 0.85 -0.1
35,327 + +0.7
35,327 + -0.8
35,363 - +1.2
35,536 - +0.7
35,575 - -0.4
35,634 - +1.4
35,645 + -1.5
35,645 + -2.0
35,645 + +0.0
35,653 - +1.2
35,728 - +0.0
35,741 + -1.9
35,874 + Shewana3_4170 0.27 -0.9
35,917 - Shewana3_4170 0.33 -0.1
35,936 - Shewana3_4170 0.36 -1.4
35,950 + Shewana3_4170 0.38 -2.4
35,996 - Shewana3_4170 0.45 +0.8
36,014 + Shewana3_4170 0.48 -1.4
36,074 - Shewana3_4170 0.57 +0.9
36,188 + Shewana3_4170 0.74 -0.3
36,188 + Shewana3_4170 0.74 -1.5
36,191 - Shewana3_4170 0.75 +1.0
36,231 + Shewana3_4170 0.81 +0.9
36,266 - Shewana3_4170 0.86 +1.1
36,269 + Shewana3_4170 0.87 +0.8
36,287 + Shewana3_4170 0.89 -0.0

Or see this region's nucleotide sequence