Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4155 and Shewana3_4156 overlap by 4 nucleotides Shewana3_4156 and Shewana3_4157 are separated by 631 nucleotides
Shewana3_4155: Shewana3_4155 - RND family efflux transporter MFP subunit (RefSeq), at 16,506 to 17,447
_4155
Shewana3_4156: Shewana3_4156 - outer membrane efflux protein (RefSeq), at 17,444 to 18,784
_4156
Shewana3_4157: Shewana3_4157 - Co/Zn/Cd efflux system component (RefSeq), at 19,416 to 20,315
_4157
Position (kb)
17
18
19 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 16.453 kb on - strand at 16.569 kb on + strand at 16.602 kb on - strand, within Shewana3_4155 at 16.921 kb on + strand, within Shewana3_4155 at 16.951 kb on + strand, within Shewana3_4155 at 17.106 kb on + strand, within Shewana3_4155 at 17.120 kb on - strand, within Shewana3_4155 at 17.294 kb on + strand, within Shewana3_4155 at 17.302 kb on - strand, within Shewana3_4155 at 17.387 kb on + strand at 17.493 kb on - strand at 17.513 kb on - strand at 17.534 kb on + strand at 17.772 kb on - strand, within Shewana3_4156 at 17.941 kb on - strand, within Shewana3_4156 at 18.104 kb on + strand, within Shewana3_4156 at 18.109 kb on + strand, within Shewana3_4156 at 18.321 kb on + strand, within Shewana3_4156 at 18.408 kb on - strand, within Shewana3_4156 at 18.423 kb on + strand, within Shewana3_4156 at 18.560 kb on + strand, within Shewana3_4156 at 18.644 kb on - strand, within Shewana3_4156 at 19.050 kb on - strand at 19.276 kb on - strand at 19.422 kb on - strand at 19.422 kb on - strand at 19.427 kb on - strand at 19.497 kb on + strand at 19.695 kb on + strand, within Shewana3_4157 at 19.695 kb on + strand, within Shewana3_4157 at 19.708 kb on - strand, within Shewana3_4157
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 16,453 - +0.4 16,569 + +0.4 16,602 - Shewana3_4155 0.10 +0.8 16,921 + Shewana3_4155 0.44 +0.2 16,951 + Shewana3_4155 0.47 +0.5 17,106 + Shewana3_4155 0.64 -0.8 17,120 - Shewana3_4155 0.65 +0.8 17,294 + Shewana3_4155 0.84 +1.0 17,302 - Shewana3_4155 0.85 -2.2 17,387 + -1.6 17,493 - -1.3 17,513 - -1.8 17,534 + +0.6 17,772 - Shewana3_4156 0.24 +1.3 17,941 - Shewana3_4156 0.37 +0.9 18,104 + Shewana3_4156 0.49 +1.0 18,109 + Shewana3_4156 0.50 -0.7 18,321 + Shewana3_4156 0.65 -0.2 18,408 - Shewana3_4156 0.72 -2.3 18,423 + Shewana3_4156 0.73 +0.3 18,560 + Shewana3_4156 0.83 +0.2 18,644 - Shewana3_4156 0.89 +0.8 19,050 - +0.8 19,276 - -1.7 19,422 - -1.1 19,422 - +0.8 19,427 - +1.1 19,497 + -0.1 19,695 + Shewana3_4157 0.31 +0.5 19,695 + Shewana3_4157 0.31 +0.7 19,708 - Shewana3_4157 0.32 -5.0
Or see this region's nucleotide sequence