Experiment: Paraquat dichloride 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3777 and Shew_3778 overlap by 4 nucleotides Shew_3778 and Shew_3779 are separated by 8 nucleotides Shew_3779 and Shew_3780 are separated by 115 nucleotides
Shew_3777: Shew_3777 - hypothetical protein (RefSeq), at 4,496,585 to 4,497,847
_3777
Shew_3778: Shew_3778 - ABC transporter-related protein (RefSeq), at 4,497,844 to 4,498,695
_3778
Shew_3779: Shew_3779 - GntR family transcriptional regulator (RefSeq), at 4,498,704 to 4,499,084
_3779
Shew_3780: Shew_3780 - TAP domain-containing protein (RefSeq), at 4,499,200 to 4,500,753
_3780
Position (kb) 4497
4498
4499 Strain fitness (log2 ratio) -2
-1
0
1 at 4496.925 kb on + strand, within Shew_3777 at 4496.995 kb on - strand, within Shew_3777 at 4496.996 kb on + strand, within Shew_3777 at 4497.041 kb on + strand, within Shew_3777 at 4497.054 kb on + strand, within Shew_3777 at 4497.054 kb on + strand, within Shew_3777 at 4497.054 kb on + strand, within Shew_3777 at 4497.067 kb on - strand, within Shew_3777 at 4497.072 kb on - strand, within Shew_3777 at 4497.163 kb on + strand, within Shew_3777 at 4497.319 kb on - strand, within Shew_3777 at 4497.455 kb on - strand, within Shew_3777 at 4497.509 kb on + strand, within Shew_3777 at 4497.530 kb on + strand, within Shew_3777 at 4497.588 kb on - strand, within Shew_3777 at 4497.614 kb on + strand, within Shew_3777 at 4497.614 kb on + strand, within Shew_3777 at 4497.617 kb on - strand, within Shew_3777 at 4497.769 kb on + strand at 4497.845 kb on + strand at 4498.001 kb on - strand, within Shew_3778 at 4498.001 kb on - strand, within Shew_3778 at 4498.026 kb on - strand, within Shew_3778 at 4498.066 kb on + strand, within Shew_3778 at 4498.190 kb on + strand, within Shew_3778 at 4498.247 kb on + strand, within Shew_3778 at 4498.270 kb on + strand, within Shew_3778 at 4498.281 kb on - strand, within Shew_3778 at 4498.296 kb on - strand, within Shew_3778 at 4498.388 kb on - strand, within Shew_3778 at 4498.397 kb on + strand, within Shew_3778 at 4498.876 kb on + strand, within Shew_3779 at 4498.885 kb on - strand, within Shew_3779 at 4499.339 kb on + strand at 4499.432 kb on + strand, within Shew_3780
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml remove 4,496,925 + Shew_3777 0.27 +1.1 4,496,995 - Shew_3777 0.32 +0.1 4,496,996 + Shew_3777 0.33 +0.5 4,497,041 + Shew_3777 0.36 +0.0 4,497,054 + Shew_3777 0.37 -0.7 4,497,054 + Shew_3777 0.37 -0.2 4,497,054 + Shew_3777 0.37 +0.3 4,497,067 - Shew_3777 0.38 -1.6 4,497,072 - Shew_3777 0.39 +0.2 4,497,163 + Shew_3777 0.46 -0.0 4,497,319 - Shew_3777 0.58 +0.2 4,497,455 - Shew_3777 0.69 -0.4 4,497,509 + Shew_3777 0.73 +0.5 4,497,530 + Shew_3777 0.75 -1.4 4,497,588 - Shew_3777 0.79 -0.6 4,497,614 + Shew_3777 0.81 +1.1 4,497,614 + Shew_3777 0.81 -0.0 4,497,617 - Shew_3777 0.82 +1.1 4,497,769 + +1.2 4,497,845 + -2.6 4,498,001 - Shew_3778 0.18 +1.0 4,498,001 - Shew_3778 0.18 +0.3 4,498,026 - Shew_3778 0.21 -1.0 4,498,066 + Shew_3778 0.26 -1.8 4,498,190 + Shew_3778 0.41 +0.1 4,498,247 + Shew_3778 0.47 -0.3 4,498,270 + Shew_3778 0.50 -1.4 4,498,281 - Shew_3778 0.51 +0.8 4,498,296 - Shew_3778 0.53 +0.1 4,498,388 - Shew_3778 0.64 -0.0 4,498,397 + Shew_3778 0.65 -0.1 4,498,876 + Shew_3779 0.45 -1.2 4,498,885 - Shew_3779 0.48 +0.0 4,499,339 + +0.9 4,499,432 + Shew_3780 0.15 +0.0
Or see this region's nucleotide sequence