Experiment: Paraquat dichloride 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3747 and Shew_3748 are separated by 62 nucleotides Shew_3748 and Shew_3749 overlap by 4 nucleotides Shew_3749 and Shew_3750 are separated by 108 nucleotides
Shew_3747: Shew_3747 - hypothetical protein (RefSeq), at 4,464,226 to 4,465,848
_3747
Shew_3748: Shew_3748 - hypothetical protein (RefSeq), at 4,465,911 to 4,466,717
_3748
Shew_3749: Shew_3749 - hypothetical protein (RefSeq), at 4,466,714 to 4,467,136
_3749
Shew_3750: Shew_3750 - phospholipid/glycerol acyltransferase (RefSeq), at 4,467,245 to 4,467,796
_3750
Position (kb)
4465
4466
4467 Strain fitness (log2 ratio)
-1
0
1 at 4465.012 kb on - strand, within Shew_3747 at 4465.430 kb on - strand, within Shew_3747 at 4465.550 kb on + strand, within Shew_3747 at 4466.071 kb on + strand, within Shew_3748 at 4466.079 kb on - strand, within Shew_3748 at 4466.079 kb on - strand, within Shew_3748 at 4466.130 kb on - strand, within Shew_3748 at 4466.130 kb on - strand, within Shew_3748 at 4466.504 kb on - strand, within Shew_3748 at 4466.504 kb on - strand, within Shew_3748 at 4466.504 kb on - strand, within Shew_3748 at 4466.588 kb on + strand, within Shew_3748 at 4467.234 kb on - strand at 4467.382 kb on - strand, within Shew_3750
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml remove 4,465,012 - Shew_3747 0.48 +0.2 4,465,430 - Shew_3747 0.74 +0.8 4,465,550 + Shew_3747 0.82 -0.6 4,466,071 + Shew_3748 0.20 +0.8 4,466,079 - Shew_3748 0.21 +0.3 4,466,079 - Shew_3748 0.21 +0.2 4,466,130 - Shew_3748 0.27 +1.1 4,466,130 - Shew_3748 0.27 +0.3 4,466,504 - Shew_3748 0.73 +0.4 4,466,504 - Shew_3748 0.73 +0.8 4,466,504 - Shew_3748 0.73 +0.4 4,466,588 + Shew_3748 0.84 +0.1 4,467,234 - +0.0 4,467,382 - Shew_3750 0.25 -1.4
Or see this region's nucleotide sequence