Strain Fitness in Shewanella loihica PV-4 around Shew_3748

Experiment: Paraquat dichloride 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3747 and Shew_3748 are separated by 62 nucleotidesShew_3748 and Shew_3749 overlap by 4 nucleotidesShew_3749 and Shew_3750 are separated by 108 nucleotides Shew_3747: Shew_3747 - hypothetical protein (RefSeq), at 4,464,226 to 4,465,848 _3747 Shew_3748: Shew_3748 - hypothetical protein (RefSeq), at 4,465,911 to 4,466,717 _3748 Shew_3749: Shew_3749 - hypothetical protein (RefSeq), at 4,466,714 to 4,467,136 _3749 Shew_3750: Shew_3750 - phospholipid/glycerol acyltransferase (RefSeq), at 4,467,245 to 4,467,796 _3750 Position (kb) 4465 4466 4467Strain fitness (log2 ratio) -1 0 1at 4465.012 kb on - strand, within Shew_3747at 4465.430 kb on - strand, within Shew_3747at 4465.550 kb on + strand, within Shew_3747at 4466.071 kb on + strand, within Shew_3748at 4466.079 kb on - strand, within Shew_3748at 4466.079 kb on - strand, within Shew_3748at 4466.130 kb on - strand, within Shew_3748at 4466.130 kb on - strand, within Shew_3748at 4466.504 kb on - strand, within Shew_3748at 4466.504 kb on - strand, within Shew_3748at 4466.504 kb on - strand, within Shew_3748at 4466.588 kb on + strand, within Shew_3748at 4467.234 kb on - strandat 4467.382 kb on - strand, within Shew_3750

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml
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4,465,012 - Shew_3747 0.48 +0.2
4,465,430 - Shew_3747 0.74 +0.8
4,465,550 + Shew_3747 0.82 -0.6
4,466,071 + Shew_3748 0.20 +0.8
4,466,079 - Shew_3748 0.21 +0.3
4,466,079 - Shew_3748 0.21 +0.2
4,466,130 - Shew_3748 0.27 +1.1
4,466,130 - Shew_3748 0.27 +0.3
4,466,504 - Shew_3748 0.73 +0.4
4,466,504 - Shew_3748 0.73 +0.8
4,466,504 - Shew_3748 0.73 +0.4
4,466,588 + Shew_3748 0.84 +0.1
4,467,234 - +0.0
4,467,382 - Shew_3750 0.25 -1.4

Or see this region's nucleotide sequence