Experiment: Paraquat dichloride 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3702 and Shew_3703 are separated by 135 nucleotides Shew_3703 and Shew_3704 overlap by 8 nucleotides Shew_3704 and Shew_3705 are separated by 28 nucleotides
Shew_3702: Shew_3702 - glycosyl transferase family protein (RefSeq), at 4,406,512 to 4,407,591
_3702
Shew_3703: Shew_3703 - dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq), at 4,407,727 to 4,408,275
_3703
Shew_3704: Shew_3704 - dTDP-glucose 4,6-dehydratase (RefSeq), at 4,408,268 to 4,409,338
_3704
Shew_3705: Shew_3705 - dTDP-4-dehydrorhamnose reductase (RefSeq), at 4,409,367 to 4,410,296
_3705
Position (kb) 4408
4409
4410 Strain fitness (log2 ratio) -1
0
1 at 4407.979 kb on + strand, within Shew_3703 at 4408.062 kb on + strand, within Shew_3703 at 4408.285 kb on - strand at 4408.390 kb on - strand, within Shew_3704 at 4408.392 kb on + strand, within Shew_3704 at 4408.493 kb on - strand, within Shew_3704 at 4408.611 kb on + strand, within Shew_3704 at 4408.640 kb on - strand, within Shew_3704 at 4408.915 kb on + strand, within Shew_3704 at 4408.985 kb on - strand, within Shew_3704 at 4408.998 kb on + strand, within Shew_3704 at 4409.006 kb on - strand, within Shew_3704 at 4409.422 kb on - strand at 4409.630 kb on - strand, within Shew_3705 at 4409.936 kb on + strand, within Shew_3705 at 4409.992 kb on + strand, within Shew_3705
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml remove 4,407,979 + Shew_3703 0.46 +0.2 4,408,062 + Shew_3703 0.61 +0.1 4,408,285 - -0.1 4,408,390 - Shew_3704 0.11 +0.3 4,408,392 + Shew_3704 0.12 +0.5 4,408,493 - Shew_3704 0.21 +1.0 4,408,611 + Shew_3704 0.32 -0.6 4,408,640 - Shew_3704 0.35 +0.6 4,408,915 + Shew_3704 0.60 +0.8 4,408,985 - Shew_3704 0.67 +0.4 4,408,998 + Shew_3704 0.68 +0.6 4,409,006 - Shew_3704 0.69 +0.4 4,409,422 - +0.2 4,409,630 - Shew_3705 0.28 +0.9 4,409,936 + Shew_3705 0.61 +0.2 4,409,992 + Shew_3705 0.67 +0.3
Or see this region's nucleotide sequence