Experiment: Paraquat dichloride 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3583 and Shew_3584 are separated by 11 nucleotides Shew_3584 and Shew_3585 are separated by 268 nucleotides Shew_3585 and Shew_3586 are separated by 187 nucleotides
Shew_3583: Shew_3583 - methyltransferase type 12 (RefSeq), at 4,280,417 to 4,281,052
_3583
Shew_3584: Shew_3584 - hypothetical protein (RefSeq), at 4,281,064 to 4,281,411
_3584
Shew_3585: Shew_3585 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq), at 4,281,680 to 4,283,785
_3585
Shew_3586: Shew_3586 - DTW domain-containing protein (RefSeq), at 4,283,973 to 4,284,575
_3586
Position (kb) 4281
4282
4283
4284 Strain fitness (log2 ratio) -1
0
1
2 at 4280.697 kb on + strand, within Shew_3583 at 4280.765 kb on - strand, within Shew_3583 at 4280.983 kb on + strand, within Shew_3583 at 4281.150 kb on + strand, within Shew_3584 at 4281.158 kb on - strand, within Shew_3584 at 4281.378 kb on - strand at 4281.428 kb on - strand at 4281.617 kb on - strand at 4281.825 kb on - strand at 4281.826 kb on + strand at 4281.912 kb on + strand, within Shew_3585 at 4281.942 kb on - strand, within Shew_3585 at 4282.337 kb on - strand, within Shew_3585 at 4282.512 kb on - strand, within Shew_3585 at 4282.678 kb on - strand, within Shew_3585 at 4283.042 kb on - strand, within Shew_3585 at 4283.060 kb on - strand, within Shew_3585 at 4283.225 kb on - strand, within Shew_3585 at 4283.286 kb on - strand, within Shew_3585 at 4283.288 kb on + strand, within Shew_3585 at 4283.296 kb on - strand, within Shew_3585 at 4283.456 kb on - strand, within Shew_3585 at 4283.458 kb on + strand, within Shew_3585 at 4283.621 kb on - strand at 4283.949 kb on - strand at 4283.949 kb on - strand at 4284.151 kb on - strand, within Shew_3586 at 4284.276 kb on + strand, within Shew_3586 at 4284.334 kb on + strand, within Shew_3586 at 4284.342 kb on - strand, within Shew_3586 at 4284.342 kb on - strand, within Shew_3586 at 4284.347 kb on - strand, within Shew_3586
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml remove 4,280,697 + Shew_3583 0.44 +0.3 4,280,765 - Shew_3583 0.55 -0.3 4,280,983 + Shew_3583 0.89 +0.0 4,281,150 + Shew_3584 0.25 -0.1 4,281,158 - Shew_3584 0.27 +0.6 4,281,378 - +0.9 4,281,428 - +0.4 4,281,617 - -0.6 4,281,825 - +0.4 4,281,826 + +0.2 4,281,912 + Shew_3585 0.11 -0.9 4,281,942 - Shew_3585 0.12 +0.6 4,282,337 - Shew_3585 0.31 +0.4 4,282,512 - Shew_3585 0.40 +1.2 4,282,678 - Shew_3585 0.47 +0.2 4,283,042 - Shew_3585 0.65 +0.5 4,283,060 - Shew_3585 0.66 -0.2 4,283,225 - Shew_3585 0.73 +0.5 4,283,286 - Shew_3585 0.76 +0.1 4,283,288 + Shew_3585 0.76 +0.1 4,283,296 - Shew_3585 0.77 +1.9 4,283,456 - Shew_3585 0.84 -0.1 4,283,458 + Shew_3585 0.84 +0.4 4,283,621 - +0.1 4,283,949 - -0.1 4,283,949 - +0.3 4,284,151 - Shew_3586 0.30 +0.4 4,284,276 + Shew_3586 0.50 +0.4 4,284,334 + Shew_3586 0.60 +0.8 4,284,342 - Shew_3586 0.61 +0.2 4,284,342 - Shew_3586 0.61 -0.6 4,284,347 - Shew_3586 0.62 +0.7
Or see this region's nucleotide sequence