Experiment: Paraquat dichloride 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2802 and Shew_2803 are separated by 9 nucleotides Shew_2803 and Shew_2804 are separated by 284 nucleotides
Shew_2802: Shew_2802 - periplasmic sensory protein associated with the TorRS two-component regulatory system (RefSeq), at 3,320,273 to 3,321,436
_2802
Shew_2803: Shew_2803 - DNA-binding transcriptional regulator TorR (RefSeq), at 3,321,446 to 3,322,171
_2803
Shew_2804: Shew_2804 - type IV pilus assembly PilZ (RefSeq), at 3,322,456 to 3,322,824
_2804
Position (kb)
3321
3322
3323 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3320.574 kb on + strand, within Shew_2802 at 3320.592 kb on - strand, within Shew_2802 at 3320.638 kb on - strand, within Shew_2802 at 3320.874 kb on - strand, within Shew_2802 at 3320.874 kb on - strand, within Shew_2802 at 3320.881 kb on + strand, within Shew_2802 at 3320.889 kb on - strand, within Shew_2802 at 3320.889 kb on - strand, within Shew_2802 at 3321.326 kb on - strand at 3321.430 kb on + strand at 3321.430 kb on + strand at 3321.438 kb on - strand at 3321.438 kb on - strand at 3321.613 kb on - strand, within Shew_2803 at 3321.636 kb on + strand, within Shew_2803 at 3322.055 kb on - strand, within Shew_2803 at 3322.208 kb on - strand at 3322.762 kb on + strand, within Shew_2804 at 3323.142 kb on + strand at 3323.142 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml remove 3,320,574 + Shew_2802 0.26 -0.3 3,320,592 - Shew_2802 0.27 -0.3 3,320,638 - Shew_2802 0.31 +0.9 3,320,874 - Shew_2802 0.52 -1.2 3,320,874 - Shew_2802 0.52 -0.0 3,320,881 + Shew_2802 0.52 -0.7 3,320,889 - Shew_2802 0.53 +0.8 3,320,889 - Shew_2802 0.53 -3.1 3,321,326 - -0.2 3,321,430 + +0.2 3,321,430 + -0.2 3,321,438 - +0.6 3,321,438 - +0.3 3,321,613 - Shew_2803 0.23 +1.2 3,321,636 + Shew_2803 0.26 +1.2 3,322,055 - Shew_2803 0.84 +0.5 3,322,208 - +0.2 3,322,762 + Shew_2804 0.83 +0.7 3,323,142 + +0.8 3,323,142 + +0.7
Or see this region's nucleotide sequence