Strain Fitness in Shewanella loihica PV-4 around Shew_2741

Experiment: Paraquat dichloride 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2740 and Shew_2741 are separated by 298 nucleotidesShew_2741 and Shew_2742 are separated by 892 nucleotides Shew_2740: Shew_2740 - YfaZ family protein (RefSeq), at 3,237,800 to 3,238,333 _2740 Shew_2741: Shew_2741 - glutathione peroxidase (RefSeq), at 3,238,632 to 3,239,120 _2741 Shew_2742: Shew_2742 - peptidase M1, membrane alanine aminopeptidase (RefSeq), at 3,240,013 to 3,241,833 _2742 Position (kb) 3238 3239 3240Strain fitness (log2 ratio) -2 -1 0 1at 3237.738 kb on + strandat 3237.755 kb on + strandat 3237.763 kb on - strandat 3238.064 kb on - strand, within Shew_2740at 3238.509 kb on - strandat 3238.532 kb on + strandat 3238.532 kb on + strandat 3238.540 kb on - strandat 3238.781 kb on + strand, within Shew_2741at 3238.781 kb on + strand, within Shew_2741at 3239.015 kb on + strand, within Shew_2741at 3239.050 kb on + strand, within Shew_2741at 3239.726 kb on - strandat 3239.996 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml
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3,237,738 + +0.6
3,237,755 + -0.0
3,237,763 - +0.0
3,238,064 - Shew_2740 0.49 -0.3
3,238,509 - -0.1
3,238,532 + +0.4
3,238,532 + +0.0
3,238,540 - -1.9
3,238,781 + Shew_2741 0.30 -0.4
3,238,781 + Shew_2741 0.30 -0.6
3,239,015 + Shew_2741 0.78 -0.8
3,239,050 + Shew_2741 0.85 -2.4
3,239,726 - +0.0
3,239,996 + +0.9

Or see this region's nucleotide sequence