Experiment: Paraquat dichloride 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2468 and Shew_2469 are separated by 48 nucleotides Shew_2469 and Shew_2470 are separated by 4 nucleotides Shew_2470 and Shew_2471 are separated by 91 nucleotides Shew_2471 and Shew_2472 are separated by 79 nucleotides Shew_2472 and Shew_2473 are separated by 59 nucleotides
Shew_2468: Shew_2468 - RNA-binding S4 domain-containing protein (RefSeq), at 2,904,686 to 2,904,916
_2468
Shew_2469: Shew_2469 - GCN5-related N-acetyltransferase (RefSeq), at 2,904,965 to 2,905,513
_2469
Shew_2470: Shew_2470 - PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq), at 2,905,518 to 2,905,796
_2470
Shew_2471: Shew_2471 - hypothetical protein (RefSeq), at 2,905,888 to 2,907,723
_2471
Shew_2472: Shew_2472 - diguanylate cyclase (RefSeq), at 2,907,803 to 2,908,312
_2472
Shew_2473: Shew_2473 - tetratricopeptide domain-containing protein (RefSeq), at 2,908,372 to 2,909,619
_2473
Position (kb)
2905
2906
2907
2908 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2905.140 kb on + strand, within Shew_2469 at 2905.580 kb on - strand, within Shew_2470 at 2905.654 kb on + strand, within Shew_2470 at 2906.226 kb on - strand, within Shew_2471 at 2906.306 kb on + strand, within Shew_2471 at 2906.690 kb on - strand, within Shew_2471 at 2907.168 kb on + strand, within Shew_2471 at 2907.284 kb on + strand, within Shew_2471 at 2907.354 kb on + strand, within Shew_2471 at 2907.419 kb on - strand, within Shew_2471 at 2907.544 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml remove 2,905,140 + Shew_2469 0.32 -0.4 2,905,580 - Shew_2470 0.22 +0.2 2,905,654 + Shew_2470 0.49 +0.2 2,906,226 - Shew_2471 0.18 +1.1 2,906,306 + Shew_2471 0.23 -2.9 2,906,690 - Shew_2471 0.44 +0.2 2,907,168 + Shew_2471 0.70 +0.4 2,907,284 + Shew_2471 0.76 +0.1 2,907,354 + Shew_2471 0.80 +0.7 2,907,419 - Shew_2471 0.83 +1.1 2,907,544 - +0.5
Or see this region's nucleotide sequence