Experiment: Paraquat dichloride 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2443 and Shew_2444 are separated by 69 nucleotides Shew_2444 and Shew_2445 are separated by 144 nucleotides Shew_2445 and Shew_2446 are separated by 126 nucleotides Shew_2446 and Shew_2447 are separated by 234 nucleotides
Shew_2443: Shew_2443 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 2,872,114 to 2,874,537
_2443
Shew_2444: Shew_2444 - hypothetical protein (RefSeq), at 2,874,607 to 2,874,987
_2444
Shew_2445: Shew_2445 - hypothetical protein (RefSeq), at 2,875,132 to 2,875,608
_2445
Shew_2446: Shew_2446 - GTP cyclohydrolase II (RefSeq), at 2,875,735 to 2,876,352
_2446
Shew_2447: Shew_2447 - hypothetical protein (RefSeq), at 2,876,587 to 2,876,943
_2447
Position (kb)
2875
2876 Strain fitness (log2 ratio)
-1
0
1 at 2874.153 kb on + strand, within Shew_2443 at 2874.153 kb on + strand, within Shew_2443 at 2874.544 kb on + strand at 2874.559 kb on + strand at 2874.567 kb on - strand at 2874.679 kb on + strand, within Shew_2444 at 2874.687 kb on - strand, within Shew_2444 at 2875.269 kb on + strand, within Shew_2445 at 2875.557 kb on + strand, within Shew_2445 at 2875.577 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml remove 2,874,153 + Shew_2443 0.84 +0.8 2,874,153 + Shew_2443 0.84 +0.3 2,874,544 + +0.5 2,874,559 + -0.5 2,874,567 - +0.1 2,874,679 + Shew_2444 0.19 +0.8 2,874,687 - Shew_2444 0.21 +0.5 2,875,269 + Shew_2445 0.29 -0.4 2,875,557 + Shew_2445 0.89 -0.5 2,875,577 - -0.1
Or see this region's nucleotide sequence