Strain Fitness in Shewanella loihica PV-4 around Shew_2432

Experiment: Paraquat dichloride 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2431 and Shew_2432 overlap by 7 nucleotidesShew_2432 and Shew_2433 are separated by 84 nucleotidesShew_2433 and Shew_2434 overlap by 8 nucleotides Shew_2431: Shew_2431 - TPR repeat-containing protein (RefSeq), at 2,856,557 to 2,858,638 _2431 Shew_2432: Shew_2432 - hypothetical protein (RefSeq), at 2,858,632 to 2,860,272 _2432 Shew_2433: Shew_2433 - RNA polymerase sigma factor (RefSeq), at 2,860,357 to 2,860,920 _2433 Shew_2434: Shew_2434 - hypothetical protein (RefSeq), at 2,860,913 to 2,861,617 _2434 Position (kb) 2858 2859 2860 2861Strain fitness (log2 ratio) -3 -2 -1 0 1at 2857.826 kb on - strand, within Shew_2431at 2857.958 kb on + strand, within Shew_2431at 2859.083 kb on - strand, within Shew_2432at 2859.233 kb on + strand, within Shew_2432at 2859.233 kb on + strand, within Shew_2432at 2859.350 kb on + strand, within Shew_2432at 2859.360 kb on + strand, within Shew_2432at 2859.368 kb on - strand, within Shew_2432at 2859.688 kb on - strand, within Shew_2432at 2859.876 kb on - strand, within Shew_2432at 2860.113 kb on - strandat 2860.120 kb on - strandat 2861.144 kb on + strand, within Shew_2434

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml
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2,857,826 - Shew_2431 0.61 -3.4
2,857,958 + Shew_2431 0.67 -0.4
2,859,083 - Shew_2432 0.27 -1.9
2,859,233 + Shew_2432 0.37 -2.9
2,859,233 + Shew_2432 0.37 +0.4
2,859,350 + Shew_2432 0.44 -1.0
2,859,360 + Shew_2432 0.44 -1.3
2,859,368 - Shew_2432 0.45 +1.1
2,859,688 - Shew_2432 0.64 -0.6
2,859,876 - Shew_2432 0.76 -1.0
2,860,113 - -1.7
2,860,120 - -0.2
2,861,144 + Shew_2434 0.33 -1.4

Or see this region's nucleotide sequence