Strain Fitness in Shewanella loihica PV-4 around Shew_2395

Experiment: Paraquat dichloride 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2394 and Shew_2395 are separated by 327 nucleotidesShew_2395 and Shew_2396 are separated by 730 nucleotides Shew_2394: Shew_2394 - phosphate acetyltransferase (RefSeq), at 2,807,561 to 2,809,699 _2394 Shew_2395: Shew_2395 - hypothetical protein (RefSeq), at 2,810,027 to 2,810,458 _2395 Shew_2396: Shew_2396 - hypothetical protein (RefSeq), at 2,811,189 to 2,811,413 _2396 Position (kb) 2810 2811Strain fitness (log2 ratio) -1 0 1 2at 2809.701 kb on - strandat 2810.073 kb on + strand, within Shew_2395at 2810.373 kb on - strand, within Shew_2395at 2810.883 kb on - strandat 2810.913 kb on + strandat 2811.173 kb on + strandat 2811.213 kb on + strand, within Shew_2396at 2811.228 kb on - strand, within Shew_2396

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml
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2,809,701 - -0.9
2,810,073 + Shew_2395 0.11 +2.0
2,810,373 - Shew_2395 0.80 +0.4
2,810,883 - +0.8
2,810,913 + -0.6
2,811,173 + +0.0
2,811,213 + Shew_2396 0.11 +0.0
2,811,228 - Shew_2396 0.17 -0.4

Or see this region's nucleotide sequence