Strain Fitness in Shewanella loihica PV-4 around Shew_2094

Experiment: Paraquat dichloride 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntthiH and Shew_2092 are separated by 4 nucleotidesShew_2092 and Shew_2093 are separated by 1 nucleotidesShew_2093 and Shew_2094 overlap by 8 nucleotidesShew_2094 and Shew_2095 overlap by 14 nucleotides Shew_2091: thiH - thiamine biosynthesis protein ThiH (RefSeq), at 2,418,226 to 2,419,344 thiH Shew_2092: Shew_2092 - thiazole biosynthesis family protein (RefSeq), at 2,419,349 to 2,420,122 _2092 Shew_2093: Shew_2093 - thiamine biosynthesis protein ThiS (RefSeq), at 2,420,124 to 2,420,333 _2093 Shew_2094: Shew_2094 - UBA/THIF-type NAD/FAD binding protein (RefSeq), at 2,420,326 to 2,421,174 _2094 Shew_2095: Shew_2095 - phosphomethylpyrimidine kinase (RefSeq), at 2,421,161 to 2,422,906 _2095 Position (kb) 2420 2421 2422Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2419.930 kb on + strand, within Shew_2092at 2420.359 kb on + strandat 2420.367 kb on - strandat 2420.726 kb on + strand, within Shew_2094at 2420.810 kb on + strand, within Shew_2094at 2420.918 kb on + strand, within Shew_2094at 2421.046 kb on - strand, within Shew_2094at 2421.179 kb on - strandat 2421.413 kb on - strand, within Shew_2095at 2421.438 kb on + strand, within Shew_2095at 2421.899 kb on + strand, within Shew_2095

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml
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2,419,930 + Shew_2092 0.75 +0.5
2,420,359 + -2.7
2,420,367 - +0.5
2,420,726 + Shew_2094 0.47 +0.7
2,420,810 + Shew_2094 0.57 -0.0
2,420,918 + Shew_2094 0.70 +1.3
2,421,046 - Shew_2094 0.85 +0.1
2,421,179 - -0.3
2,421,413 - Shew_2095 0.14 +3.4
2,421,438 + Shew_2095 0.16 -0.4
2,421,899 + Shew_2095 0.42 +1.0

Or see this region's nucleotide sequence