Strain Fitness in Shewanella loihica PV-4 around Shew_2033
Experiment: Paraquat dichloride 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 10 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,346,595 | + | +0.1 | |||
2,346,604 | - | +0.9 | |||
2,346,967 | + | Shew_2033 | 0.75 | -0.4 | |
2,346,967 | + | Shew_2033 | 0.75 | -3.3 | |
2,347,093 | + | +0.6 | |||
2,347,208 | - | +0.7 | |||
2,347,409 | - | Shew_2034 | 0.30 | +1.1 | |
2,347,708 | + | Shew_2034 | 0.70 | +0.3 | |
2,347,796 | + | Shew_2034 | 0.82 | +0.7 | |
2,347,815 | + | Shew_2034 | 0.84 | +0.4 | |
2,348,021 | - | Shew_2035 | 0.45 | -0.7 |
Or see this region's nucleotide sequence