Strain Fitness in Shewanella loihica PV-4 around Shew_1995

Experiment: Paraquat dichloride 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1994 and Shew_1995 are separated by 84 nucleotidesShew_1995 and Shew_1996 are separated by 79 nucleotidesShew_1996 and Shew_1997 overlap by 23 nucleotides Shew_1994: Shew_1994 - universal stress protein UspE (RefSeq), at 2,305,750 to 2,306,682 _1994 Shew_1995: Shew_1995 - PP-loop domain-containing protein (RefSeq), at 2,306,767 to 2,307,720 _1995 Shew_1996: Shew_1996 - hypothetical protein (RefSeq), at 2,307,800 to 2,308,423 _1996 Shew_1997: Shew_1997 - bax protein, putative (RefSeq), at 2,308,401 to 2,309,273 _1997 Position (kb) 2306 2307 2308Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2305.950 kb on + strand, within Shew_1994at 2305.958 kb on - strand, within Shew_1994at 2307.047 kb on + strand, within Shew_1995at 2307.278 kb on + strand, within Shew_1995at 2307.631 kb on - strandat 2307.837 kb on - strandat 2308.186 kb on + strand, within Shew_1996

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml
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2,305,950 + Shew_1994 0.21 +0.6
2,305,958 - Shew_1994 0.22 +1.2
2,307,047 + Shew_1995 0.29 +0.3
2,307,278 + Shew_1995 0.54 +1.9
2,307,631 - -3.1
2,307,837 - +0.9
2,308,186 + Shew_1996 0.62 +0.6

Or see this region's nucleotide sequence